The parameter -m is optional. Adds a marge of 100 for the variant's breakpoints (when you compare variants with the Truth file)

work1: number of barcodes in each variant.

python work1.py -vcf donnees1/SVs/HSapiensChr1_Simulated/candidateSV_inversion.vcf -bam donnees1/BAM/HSapiensChr1_Simulated/possorted_bam.bam -t donnees1/SVs/HSapiensChr1_Simulated/Truth -m

work2: number of isolated barcodes in each variant.

python work2.py -vcf donnees1/SVs/HSapiensChr1_Simulated/candidateSV_inversion.vcf -bam donnees1/BAM/HSapiensChr1_Simulated/possorted_bam.bam -bci NewBCIs/HSapiensChr1_Simulated/possorted_bam.bci -t donnees1/SVs/HSapiensChr1_Simulated/Truth -m

work3: number of common barcodes between the left-region of breakpoint and the right one.

python work3.py -vcf donnees1/SVs/Ecoli_Simulated/candidateSV_inversion.vcf -bam donnees1/BAM/Ecoli_Simulated/possorted_bam.bam -t donnees1/SVs/Ecoli_Simulated/Truth -m