Modelling Pathogen Response of the Human Immune System in a Reduced State Space

This repository contains the Python libraries dataset_lib.py and classification_lib.py that include the main functionalities introduced in the paper. The example_usage.ipynb notebook provides usage examples of differential expression computation and the Naive Bayes classifier.

Dependencies

Make sure you have the following Python libraries installed:

• NumPy
• Pandas
• Scikit-learn
• Anndata