Prerequisites: FSL, Mrtrix3, ANTS
This pipeline can be run on linux and mac OS X.
Diffusion MRI data set with a pair of opposite PE directions(blip-up and blip-down) and 3D-T1 is required.
Clone this repository, get into "scripts" directory, and type "tauto.sh h", then you can see help in English and Japanese.
git clone https://github.com/Kikubernetes/DTIpipeline.git
cd path/to/DTIpipeline/scripts
./tauto.sh h