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LRB-IIMCB

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  1. ninetails ninetails Public

    An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads

    R 6 3

  2. nanopolish_mRNA-1273_BNT162b2 nanopolish_mRNA-1273_BNT162b2 Public

    Forked from jts/nanopolish

    Nanopolish polya-moderna for the identification of terminal pentamer in the mRNA-1273 direct RNA sequencing data

    C++ 1 2

  3. nanotail nanotail Public

    Forked from smaegol/nanotail

    R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions

    R

  4. DTW_mRNA-1273 DTW_mRNA-1273 Public

    Dynamic Time Warping functions used for the identification of mRNA-1273 reads in the nanopore DRS raw sequencing data

    Python 1 1

Repositories

Showing 10 of 13 repositories
  • dorado Public Forked from nanoporetech/dorado

    Oxford Nanopore's Basecaller

    LRB-IIMCB/dorado’s past year of commit activity
    C++ 0 69 0 0 Updated Dec 12, 2024
  • ninetails Public

    An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads

    LRB-IIMCB/ninetails’s past year of commit activity
    R 6 3 2 0 Updated Dec 5, 2024
  • nanotail Public Forked from smaegol/nanotail

    R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions

    LRB-IIMCB/nanotail’s past year of commit activity
    R 0 GPL-3.0 5 0 0 Updated Sep 25, 2024
  • ninetails_processing Public

    Scripts used during the development of Ninetails package

    LRB-IIMCB/ninetails_processing’s past year of commit activity
    R 0 MIT 1 0 0 Updated Aug 13, 2024
  • DTW_mRNA-1273 Public

    Dynamic Time Warping functions used for the identification of mRNA-1273 reads in the nanopore DRS raw sequencing data

    LRB-IIMCB/DTW_mRNA-1273’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Apr 18, 2024
  • mRNA-1273_BNT162b2_test_data Public

    test data of mRNA-1273 and BNT162b2 direct RNA nanopore sequencing

    LRB-IIMCB/mRNA-1273_BNT162b2_test_data’s past year of commit activity
    1 MIT 0 0 0 Updated Apr 18, 2024
  • nanopolish_mRNA-1273_BNT162b2 Public Forked from jts/nanopolish

    Nanopolish polya-moderna for the identification of terminal pentamer in the mRNA-1273 direct RNA sequencing data

    LRB-IIMCB/nanopolish_mRNA-1273_BNT162b2’s past year of commit activity
    C++ 1 MIT 196 0 0 Updated Apr 18, 2024
  • wf-transcriptomes Public Forked from epi2me-labs/wf-transcriptomes
    LRB-IIMCB/wf-transcriptomes’s past year of commit activity
    Python 0 34 0 0 Updated Aug 2, 2023
  • yeast_deadenylation_methods_chapter Public

    Transcriptome-wide analysis of mRNA adenylation status in yeast using nanopore sequencing - materials accompanying the methods chapter

    LRB-IIMCB/yeast_deadenylation_methods_chapter’s past year of commit activity
    TeX 0 MIT 0 0 0 Updated Jan 30, 2023
  • nanopolish_BNT162b2 Public Forked from LRB-IIMCB/nanopolish_mRNA-1273_BNT162b2

    Nanopolish polya-pfizer for the identification of terminal pentamer in the mRNA-1273 direct RNA sequencing data

    LRB-IIMCB/nanopolish_BNT162b2’s past year of commit activity
    C++ 0 MIT 196 0 0 Updated Dec 5, 2022
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