mridata-recon

Joseph Y. Cheng <jycheng [at] stanford [dot] edu>

Basic reconstruction scripts for data uploaded to mridata.org

Setup

Install the required python modules:

pip install -r requirements

Datasets

• Stanford 2D FSE: recon_fse_2d.py (also supports NYU machine learning data)

Example

To create cfl and hdr files that are support by BART, run the following command for the downloaded dataset data.h5:

python recon_fse_2d.py --verbose data.h5

For more options, run the following command:

python recon_fse_2d.py --help

References

1. http://mridata.org/
2. https://mrirecon.github.io/bart/