Mentesh Tepe kinship analysis

This repository contains a collection of scripts used for the data preprocessing and kinship analysis found within :

Guarino-Vignon P., et al. "Genome-wide analysis of a collective grave from Mentesh Tepe provides insight into the population structure of early neolithic population in the South Caucasus" . Communications Biology (2023)

More information regarding the different steps of the analysis can be found in the sub-READMEs of this repository, under the src directory. In order of execution:

• EAGER-preprocessing
• READ-analysis
• TKGWV2-analysis

Directory structure

• envs : conda/mamba environment definition files used during the analysis (in .yml format)
• src: Bash scripts of each pre-processing /analysis step.
• misc: Example screen captures of the EAGER-GUI configuration.