Code

Update to 1.0 backend#748

Code

Merged

MilesCranmer merged 92 commits intomasterMilesCranmer/PySR:masterfrom release-v1-betaMilesCranmer/PySR:release-v1-betaCopy head branch name to clipboardNov 30, 2024

+1,787-714

Commits

Commits on Nov 29, 2024

• wip: start importing v1

  MilesCranmer

  committed
  967995b

• docs: update homepage

  MilesCranmer

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  932adf4

• deps: bump to 1.0.0-beta4

  MilesCranmer

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  063e437

• fix: avoid deleting temp dir

  MilesCranmer

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  cfe90f1

• fix: update to new output format

  MilesCranmer

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  9733d2a

• deps: set backend version to 1.0.0

  MilesCranmer

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  d37aa63

• chore: hide outputs dir

  MilesCranmer

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  c6719d1

• fix: behavior of loading from checkpoints

  MilesCranmer

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  05257dc

• test: fix latex tests

  MilesCranmer

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  80195d8

• test: get more tests working

  MilesCranmer

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  2cfc4a3

• deps: bump overall julia requirements

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  829bb57

• test: more fixes to test directories

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  04042ef

• test: clean up version check

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  1817202

• test: fix paths in jax test

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  a271659

• deps: update default versions for Docker

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  f1f64e6

• deps: fix SR version

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  f4a083c

• deps: bump to 1.0.0

  MilesCranmer

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  a38119c

• deps: bump backend to 1.0.1

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  09b1930

• fix: missing clearing of equation_file_contents_

  MilesCranmer

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  0d1da79

• chore: ignore mypy cache

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  bf15526

• fix: typing issue for output_directory_

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  59ff59a

• feat: start ExpressionOptions integration

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  22e1f9f

• fix: simplify defaults to true

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  2608fdd

• feat: don't fail search if checkpointing fails

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  f3d3358

• feat: get TemplateExpression fit working

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  0f2726c

• feat: add assertions

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  b10f787

• docs: document expression_options

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  d3503f5

• refactor: have default expression_options be None

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  39b5823

• deps: bump backend to 1.0.2

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  5b43b0f

• deps: bump min julia version

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  20e5eef

• test: fix mypy error

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  f905012

• refactor: avoid duplicate code

  MilesCranmer

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  73f3af6

• refactor: rename expression options to expression specs

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  17971cc

• feat: add interface methods for declaring sympy/latex/jax/torch support

  MilesCranmer

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  688be6b

• refactor: move out julia expression code

  MilesCranmer

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  1eebc08

• feat: ensure predict uses same dtype as fit

  MilesCranmer

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  b05f8ab

• feat: introduce ParametricExpressionSpec

  MilesCranmer

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  02613da

• test: fix mypy errors

  MilesCranmer

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  492ae57

• refactor: clean up redundant lines

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  4bada83

• refactor: more type stubs

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  1196b76

• refactor: add more typing information

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  eea8900

• refactor: further improvements to typing

  MilesCranmer

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  82eef25

• refactor: reduce julia compilation

  MilesCranmer

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  78b3b0a

• test: TemplateExpressionSpec for out-of-domain data

  MilesCranmer

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  93f9df7

• test: clean up TemplateExpressionSpec test

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  58b429a

• test: ParametricExpressionSpec pipeline test

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  f433789

• test: rename to test_main.py for pytest compat

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  3fd937d

• deps: require Python >= 3.9

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  959dfdb

• test: require pytest in dev deps

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  2e75f4e

• fix: TypeAlias definition on older Python

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  62865b6

• fix: only convert dtype for Julia evaluations

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  713d3c6

• deps: add back typing-extensions

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  baa953d

• test: fix mypy errors

  MilesCranmer

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  b2fe574

• test: improve coverage for new 1.0 code

  MilesCranmer

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  c2cbbfc

• feat: get complexity_mapping working

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  9fabec6

• docs: push to new url

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  0b4f6d4

• deps: update backend

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  a12c12e

• feat: add missing hyperparams

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  238cdfb

• feat!: update all hyperparameters

  MilesCranmer

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  cc0728c

• feat!: introduce parallelism parameter instead of multithreading

  MilesCranmer

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  878d2da

• test: update test for random_state test

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  427f092

• test: update tests to new parallelism syntax

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  e07ce3d

• docs: avoid mentioning procs

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• test: help mypy

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• docs: suggest maxsize=20 in README

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  94ef0bc

• chore: move dependencies to pyproject.toml

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  88964b2

• deps: create optional deps under dev

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  2df313b

• ci: enable beartype checking

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  d1927bf

• refactor: incorporate PEP 585

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  aa8fda8

• fix: dockerfile requirements

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  e216da8

• ci: separate beartype test

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  c2e7d33

• test: fix some beartype-identified errors

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  1eadf50

Commits on Nov 30, 2024

• test: fix jax mapping test

  MilesCranmer

  committed
  147432b

• deps: require Python >= 3.10

  MilesCranmer

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  c5404f8

• deps: fix pyjuliacall version

  MilesCranmer

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  95fb9d1

• test: fix type annotation

  MilesCranmer

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  762d8f9

• ci: tweak conda backend

  MilesCranmer

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  9e87e03

• refactor: more typing info

  MilesCranmer

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  324d1f6

• docs: add example with template expression

  MilesCranmer

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  4dc4e6f

• feat: introduce autodiff_backend

  MilesCranmer

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  2f2fba5

• refactor: removed deprecated pythoncall commands

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  5d154a1

• feat: create TensorBoardLoggerSpec

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  7a1cd8a

• feat: tweak defaults of TensorBoardLoggerSpec

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  23de621

• refactor: use name logger_spec instead of logger

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  5690c4e

• feat: log hyperparams in tensorboard

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  8eb512a

• chore: add tensorboard to dev env

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  2c1c8ed

• test: tensorboard logger spec

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  a5161fc

• docs: document logger specifications

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  84cb12e

• chore: tweak coverage settings

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  be9f9d8

• docs: add to param groupings

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  c7b63a3

• test: fix mypy errors

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  f16f39e

• test: skip tensorboard test on windows

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  0aaf3b9