v0.5.2

ProtPlot v0.5.2

Diff since v0.5.1

v0.5.1

ProtPlot v0.5.1

Diff since v0.5.0

• Update to ProteinChains v0.2

v0.5.0

ProtPlot v0.5.0

Diff since v0.4.6

• Add argument conversion for BioStructures types.
• Use ProteinChains.jl instead of the Protein submodule of Backboner.jl for input/output.

v0.4.6

ProtPlot v0.4.6

Diff since v0.4.5

v0.4.5

ProtPlot v0.4.5

Diff since v0.4.4

• Fix error when trying to render empty protein chains.
• Fix typo

v0.4.4

ProtPlot v0.4.4

Diff since v0.4.3

• Update to Backboner v0.11.
• Add support for 3x3xL chain backbone array input, only using Backboner for reading PDB/mmCIF.
• Add PDBEntry function for downloading a temporary PDB file that returns a vector of chains.

v0.4.3

ProtPlot v0.4.3

Diff since v0.4.2

• Fix beta strand arrows being inside out, and therefore not reflecting light properly.
• Fix bug when a helix/strand was immediately followed by a strand/helix, where the loop in between their start/end alpha-carbons wouldn't render.
• Backboner v0.10 compat.
• AssigningSecondaryStructure v0.4 compat.

v0.4.2

ProtPlot v0.4.2

Diff since v0.4.1

• Require Backboner 0.9.8
• Add support for explicit Colorants (#29)
• Fix size of residues in segments, especially at ends (#30)
• Add secondary_structures attribute for manual secondary structure control (#31)
• Add Makie.convert_arguments methods for vectors of and/or Backbone, 3x3xL, 3xN matrices (#32 )

Merged pull requests:

• [compat] Require Backboner 0.9.7 (#28) (@timholy)
• Add support for explicit Colorants (#29) (@timholy)

Closed issues:

• Weighted residues (#30)
• Secondary structure assignment control (#31)
• Backbone atom coordinates constructor (#32)

v0.4.1

ProtPlot v0.4.1

Diff since v0.4.0

v0.4.0

ProtPlot v0.4.0

Diff since v0.3.10

• Depend on Makie instead of GLMakie, and let the user import a backend. (See #23)
• Use recipes to create the Ribbon plot type, with ribbon and ribbon! functions that can take a vector of chains, a chain, or a path to a PDB file.
• ribbon now makes a standard uninteractive 2D plot. Use ribbon_scene for a convenient and interactive scene with a ribbon, or add a ribbon to your own using ribbon!.
• Rework rendering of ribbons.
  • More robust beta strand rendering.
  • Only render helices and strands between the first and last alphacarbon.
  • Extend coils to alphacarbons of other secondary structure elements, making sure the direction matches.
  • Remove "Segments" type, and simply keep track of subchain ranges instead.
  • Cleaner code.
• Use recipes to create the Ramachandran plot type.

Merged pull requests:

• Fix test broken in Makie 0.21 (#24) (@timholy)
• Use plot recipes (#26) (@anton083)

Closed issues:

• Use Makie recipes (#25)