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major refactor of TRAPI and summarization code #231

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major refactor of TRAPI and summarization code #231

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Commits on May 8, 2024

  1. cleanup summary edge abstraction; other minor cleanups/comments

    Guthrie Price committed May 8, 2024
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Commits on May 15, 2024

  1. cleanup and begin splitting up trapi.mjs

    Guthrie Price committed May 15, 2024
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  2. Merge branch 'develop' into refactor/trapi-cleanup

    Guthrie Price committed May 15, 2024
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Commits on May 17, 2024

  1. refactor TRAPI query graph generation

    Guthrie Price committed May 17, 2024
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Commits on May 19, 2024

  1. add TRAPI loading into QGraph elements

    Guthrie Price committed May 19, 2024
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Commits on May 21, 2024

  1. fix merge conflicts

    Guthrie Price committed May 21, 2024
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  2. fix bug when merging publications

    Guthrie Price committed May 21, 2024
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  3. add qualified predicate to MVP2 query

    Guthrie Price committed May 21, 2024
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Commits on May 22, 2024

  1. fix merge conflict

    Guthrie Price committed May 22, 2024
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Commits on May 23, 2024

  1. Merge branch 'develop' into refactor/trapi-cleanup

    Guthrie Price committed May 23, 2024
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  2. reorganize file

    Guthrie Price committed May 23, 2024
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  3. convert summary metadata to class

    Guthrie Price committed May 23, 2024
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Commits on May 24, 2024

  1. simplify the number of extraction rule helpers

    Guthrie Price committed May 24, 2024
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  2. fix merge conflict

    Guthrie Price committed May 24, 2024
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  3. add transfromProperty

    Guthrie Price committed May 24, 2024
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  4. fix bug in transformProperty

    Guthrie Price committed May 24, 2024
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  5. fix bug with getProperty

    Guthrie Price committed May 24, 2024
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Commits on May 29, 2024

  1. changes to attribute gathering for clarity

    Guthrie Price committed May 29, 2024
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Commits on May 30, 2024

  1. finish cleaning up attribute extraction code

    Guthrie Price committed May 30, 2024
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Commits on May 31, 2024

  1. Merge branch 'develop' into refactor/trapi-cleanup

    Guthrie Price committed May 31, 2024
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Commits on Jun 11, 2024

  1. fix merge conflict

    Guthrie Price committed Jun 11, 2024
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  2. add TODO

    Guthrie Price committed Jun 11, 2024
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Commits on Jun 13, 2024

  1. change name of summarization lib

    Guthrie Price committed Jun 13, 2024
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  2. catch branch up with main (manual merge)

    Guthrie Price committed Jun 13, 2024
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Commits on Jun 14, 2024

  1. add TRAPI helpers for getting code kedge properties

    Guthrie Price committed Jun 14, 2024
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  2. add binding -> graph element helpers in TRAPI library

    Guthrie Price committed Jun 14, 2024
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  3. simplify endpoint finding

    Guthrie Price committed Jun 14, 2024
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  4. add comments for getting result endpoints

    Guthrie Price committed Jun 14, 2024
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Commits on Jun 15, 2024

  1. add qualifier and support graph helpers

    Guthrie Price committed Jun 15, 2024
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  2. cleanup qualified predicate generation

    Guthrie Price committed Jun 15, 2024
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  3. fix bug in getting tags

    Guthrie Price committed Jun 15, 2024
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  4. remove extra semicolon

    Guthrie Price committed Jun 15, 2024
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Commits on Jun 17, 2024

  1. fix bug that caused support paths not to be generated

    Guthrie Price committed Jun 17, 2024
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Commits on Jun 18, 2024

  1. better naming for qualified predicate generation

    Guthrie Price committed Jun 18, 2024
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Commits on Jun 19, 2024

  1. improve tagging code

    Guthrie Price committed Jun 19, 2024
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Commits on Jun 20, 2024

  1. fix bug in tagging attributes introduced in refactor

    Guthrie Price committed Jun 20, 2024
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  2. remove debug log files

    Guthrie Price committed Jun 20, 2024
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Commits on Jul 4, 2024

  1. merge develop with refactor; fix regression test structure

    Guthrie Price committed Jul 4, 2024
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Commits on Jul 8, 2024

  1. doc updates; get rid of uneeded getter function

    Guthrie Price committed Jul 8, 2024
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  2. refactor summary edges and dependant code

    Guthrie Price committed Jul 8, 2024
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Commits on Jul 12, 2024

  1. update to develop; fix regression testing

    Guthrie Price committed Jul 12, 2024
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Commits on Jul 19, 2024

  1. Merge branch 'develop' into refactor/trapi-cleanup

    Guthrie Price committed Jul 19, 2024
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  2. Throw an explicit error when a message is missing a QG

    Guthrie Price committed Jul 19, 2024
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  3. Shorten variable names for summary and fragment

    Guthrie Price committed Jul 19, 2024
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  4. Change naming for tag functions for consistency

    Guthrie Price committed Jul 19, 2024
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  5. Move helpers to trapi.mjs; Rename ids for clarity

    Guthrie Price committed Jul 19, 2024
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  6. Shorten names to increase readability

    Guthrie Price committed Jul 19, 2024
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  7. Move Summary classes; Shorten names for clarity

    Guthrie Price committed Jul 19, 2024
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  8. Add utility functions; Rename for clarity

    Guthrie Price committed Jul 19, 2024
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Commits on Jul 20, 2024

  1. Renaming for clarity

    Guthrie Price committed Jul 20, 2024
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  2. Naming for clarity

    Guthrie Price committed Jul 20, 2024
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  3. Fix regression tests

    Guthrie Price committed Jul 20, 2024
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Commits on Jul 22, 2024

  1. fix bugs in bta processing

    Guthrie Price committed Jul 22, 2024
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  2. resolve equal summary paths in pidSort

    Guthrie Price committed Jul 22, 2024
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  3. Fix bug with result tag gathering

    Guthrie Price committed Jul 22, 2024
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Commits on Jul 23, 2024

  1. fix merge conflicts

    Guthrie Price committed Jul 23, 2024
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  2. Fix multiple bugs found in regression testing

    Guthrie Price committed Jul 23, 2024
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Commits on Jul 24, 2024

  1. Fix bug in pidSort

    Guthrie Price committed Jul 24, 2024
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  2. Merge branch 'develop' into refactor/trapi-cleanup

    Guthrie Price committed Jul 24, 2024
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  3. fix merge conflicts with test/regression

    Guthrie Price committed Jul 24, 2024
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  4. remove unnecessary log

    Guthrie Price committed Jul 24, 2024
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Commits on Jul 25, 2024

  1. fix biothings curie annotation gathering

    Guthrie Price committed Jul 25, 2024
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  2. Change regression configuration to be production config

    Guthrie Price committed Jul 25, 2024
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Commits on Jul 29, 2024

  1. fix bugs with BTA attribuate process

    Guthrie Price committed Jul 29, 2024
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Commits on Jul 30, 2024

  1. Merge branch 'develop' into refactor/trapi-cleanup

    Guthrie Price committed Jul 30, 2024
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  2. Merge branch 'develop' into refactor/trapi-cleanup

    Guthrie Price committed Jul 30, 2024
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Commits on Jul 31, 2024

  1. Merge branch 'develop' into refactor/trapi-cleanup

    Guthrie Price committed Jul 31, 2024
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  2. Remove bad regression test

    Guthrie Price committed Jul 31, 2024
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Commits on Sep 19, 2024

  1. merge with develop

    Guthrie Price committed Sep 19, 2024
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Commits on Sep 20, 2024

  1. finish tag restructuring merge

    Guthrie Price committed Sep 20, 2024
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Commits on Sep 23, 2024

  1. Add submission of pathfinder queries

    Guthrie Price committed Sep 23, 2024
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  2. Finish merging pathfinder changes

    Guthrie Price committed Sep 23, 2024
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  3. fix bug with wrong name for path id generation

    Guthrie Price committed Sep 23, 2024
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Commits on Sep 24, 2024

  1. add constraints to pathfinder query

    Guthrie Price committed Sep 24, 2024
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