Improve spatial calibration figure and concept map

NEUBIAS · Sep 24, 2023 · 44c7580 · 44c7580
1 parent 9e0cf33
commit 44c7580
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Showing 5 changed files with 6 additions and 7 deletions.
diff --git a/_modules/spatial_calibration.md b/_modules/spatial_calibration.md
@@ -20,13 +20,12 @@ motivation: >
 
 concept_map: >
   graph TD
-    Im("Image") -->|has many| P("Pixel/Voxel")
-    Im --> |has| C("Calibration")
-    P -->|has| Va("Value")
-    P -->|has| I("Indices")
-    P --> |has| RWC("Real world coordinate")
-    C --> RWC
-    I --> RWC
+    Im("Image") --> P("Pixels")
+    Im --> C("Calibration")
+    P --> Va("Value")
+    P --> I("Indices")
+    I --> CC("Calibrated coordinate")
+    C --> CC
 
 figure: /figures/spatial_calibration.png
 figure_legend: Spatial calibration and size measurements

diff --git a/figures/resources/spatial_calibration.pptx b/figures/resources/spatial_calibration.pptx
diff --git a/figures/spatial_calibration.png b/figures/spatial_calibration.png
diff --git a/image_data/xy_8bit_labels__mitocheck_incenp_t1.tif b/image_data/xy_8bit_labels__mitocheck_incenp_t1.tif
diff --git a/image_data/xy_8bit_labels__mitocheck_incenp_t70.tif b/image_data/xy_8bit_labels__mitocheck_incenp_t70.tif