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Version 0.1.5

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@philipdelff philipdelff released this 14 Nov 21:50
· 71 commits to main since this release

New features

  • NMreadSim() has a new argument called rm.tmp which is used to
    remove the intermediate NONMEM files if they are successfully
    read. Remember, NMreadSim() creates a compressed results data set
    which will be read by NMreadSim() in future function calls, so
    unless debugging is needed on the simulation control streams and
    files returned by NONMEM running the simulations, it may be better
    to delete the intermediate files altogether and save the disk space.

  • expandCovs() has a new argument reduce.ref which defaults to
    TRUE meaning that by default there will be only one reference
    combination. If FALSE expandCovs() will return one reference for
    each covariate. The forest plot can be evaluated with just one
    reference simulation.

  • New function summarizeCovs() introduced to summarize simulation
    results for forest plots. This function is closely related to expandCovs()

  • NMsim() no longer requires NONMEM to be available if
    reuse.results=TRUE and NONMEM does not need to be run.

Bugfixes

  • NMsim 0.1.4 would not submit jobs to cluster when number of cores
    was nc=1. Fixed. Workaround in 0.1.4, use nc=2.

  • NMsim 0.1.4 erroneously concluded jobs had failed when sent to the
    cluster if there was no existing queue. This is due to the exit
    status of qsub in such cases. This has been fixed. As a workaround
    in 0.1.4, just run your sim again once the queue has been initiated
    by the first NMsim called.

  • When NONMEM failed in 0.1.4, NMsim might not return debugging
    info. Fixed.