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Updated example log files
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@alchemistmatt
alchemistmatt committed Aug 20, 2020
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88 changes: 48 additions & 40 deletions AScore_Console/Data/MSGFPlus_ITRAQ4plex_CDTA/LogFile.txt
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@@ -1,40 +1,48 @@
2019-05-09 04:34:21 PM Output directory not found (will auto-create): AScore\AScore_Console\Data\MSGFPlus_ITRAQ4plex_CDTA\Results_QPyroGlu
2019-05-09 04:34:21 PM Caching data in CPTAC_CompREF_00_iTRAQ_NiNTA_01b_22Mar12_Lynx_12-02-29_msgfplus_fht.txt
2019-05-09 04:34:21 PM Output directory: AScore\AScore_Console\Data\MSGFPlus_ITRAQ4plex_CDTA\Results_QPyroGlu
2019-05-09 04:34:22 PM Filtering using MSGF_SpecProb <= 1.0E-07
2019-05-09 04:34:22 PM Warning: Scan 18490 not found in spectra file for peptide R.SKEGHSLEMENENLVENGADS*DEDDNSFLKQQS*PQEPK.S
2019-05-09 04:34:23 PM Warning: Scan 22697 not found in spectra file for peptide K.TLSVAAAFNEDEDS*EPEEM@PPEAK.M
2019-05-09 04:34:23 PM Warning: Scan 23825 not found in spectra file for peptide R.GIQYIDLSSDS*EDVVSPNCSNTVQEK.T
2019-05-09 04:34:24 PM Warning: Scan 18683 not found in spectra file for peptide K.AGGGDLLLPPS*PK.V
2019-05-09 04:34:24 PM Warning: Scan 18459 not found in spectra file for peptide K.AGGGDLLLPPS*PK.V
2019-05-09 04:34:24 PM Warning: Scan 24610 not found in spectra file for peptide K.IVEPEVVGES*DS*EVEGDAWR.M
2019-05-09 04:34:24 PM Warning: Scan 18586 not found in spectra file for peptide K.AGGGDLLLPPS*PK.V
2019-05-09 04:34:25 PM Warning: Scan 20029 not found in spectra file for peptide K.GGLLTSEEDSGFSTS*PKDNSLPK.K
2019-05-09 04:34:27 PM Warning: Scan 18470 not found in spectra file for peptide R.SKEGHSLEMENENLVENGADS*DEDDNSFLKQQS*PQEPK.S
2019-05-09 04:34:27 PM Warning: Scan 18461 not found in spectra file for peptide R.SKEGHSLEMENENLVENGADS*DEDDNS*FLKQQSPQEPK.S
2019-05-09 04:34:27 PM Warning: Scan 18594 not found in spectra file for peptide R.SKEGHSLEMENENLVENGADS*DEDDNS*FLKQQSPQEPK.S
2019-05-09 04:34:27 PM Warning: Scan 22781 not found in spectra file for peptide K.TLSVAAAFNEDEDS*EPEEM@PPEAK.M
2019-05-09 04:34:27 PM Warning: Scan 23859 not found in spectra file for peptide R.GIQYIDLSSDS*EDVVSPNCSNTVQEK.T
2019-05-09 04:34:28 PM Warning: Scan 24483 not found in spectra file for peptide K.IVEPEVVGES*DS*EVEGDAWR.M
2019-05-09 04:34:28 PM Warning: Scan 22682 not found in spectra file for peptide K.TLSVAAAFNEDEDS*EPEEM@PPEAK.M
2019-05-09 04:34:28 PM Warning: Scan 22630 not found in spectra file for peptide K.TLSVAAAFNEDEDS*EPEEM@PPEAK.M
2019-05-09 04:34:28 PM Warning: Scan 18497 not found in spectra file for peptide R.SKEGHSLEMENENLVENGADS*DEDDNSFLKQQS*PQEPK.S
2019-05-09 04:34:28 PM Warning: Scan 22903 not found in spectra file for peptide K.TLSVAAAFNEDEDS*EPEEM@PPEAK.M
2019-05-09 04:34:28 PM Warning: Scan 18495 not found in spectra file for peptide R.SKEGHSLEMENENLVENGADS*DEDDNSFLKQQS*PQEPK.S
2019-05-09 04:34:28 PM Warning: Scan 15673 not found in spectra file for peptide K.SLFTSQPS*GEAEAPQTTDSPTTK.V
2019-05-09 04:34:29 PM Warning: Scan 18653 not found in spectra file for peptide R.SKEGHSLEMENENLVENGADS*DEDDNSFLKQQS*PQEPK.S
2019-05-09 04:34:29 PM Warning: Scan 20914 not found in spectra file for peptide R.DNLTLWTSDTQGDEAEAGEGGEN.-
2019-05-09 04:34:29 PM Warning: Scan 20072 not found in spectra file for peptide K.RPSFSST*PVISPAPNSTPANSNTNSNSSLITSQDAVER.A
2019-05-09 04:34:29 PM Warning: Scan 20167 not found in spectra file for peptide K.TENGTCPSPPQPLS*PAAALGSGS*AAAVPK.I
2019-05-09 04:34:29 PM Warning: Scan 24749 not found in spectra file for peptide K.IVEPEVVGES*DS*EVEGDAWR.M
2019-05-09 04:34:30 PM Warning: Scan 24278 not found in spectra file for peptide R.TTQSMQDFPVVDS*EEEAEEEFQK.E
2019-05-09 04:34:30 PM Warning: Scan 16459 not found in spectra file for peptide K.TTTAAAVASTGPS*SRSPSTLLPK.K
2019-05-09 04:34:30 PM Warning: Scan 20112 not found in spectra file for peptide K.TENGTCPS*PPQPLS*PAAALGSGSAAAVPK.I
2019-05-09 04:34:30 PM Writing 4,449 rows to CPTAC_CompREF_00_iTRAQ_NiNTA_01b_22Mar12_Lynx_12-02-29_msgfplus_fht_ascore.txt
2019-05-09 04:34:30 PM Stats by fragmentation ion type:
2019-05-09 04:34:30 PM CID peptides: 0
2019-05-09 04:34:30 PM ETD peptides: 0
2019-05-09 04:34:30 PM HCD peptides: 0
2019-05-09 04:34:33 PM AScore Complete
2019-05-09 04:34:33 PM Skipped 35 PHRP results without an AScore result
2019-05-09 04:34:33 PM Results merged; new file: CPTAC_CompREF_00_iTRAQ_NiNTA_01b_22Mar12_Lynx_12-02-29_msgfplus_fht_WithAScore.txt
2020-08-20 01:57:56 PM Loaded modifications from: DynMetOx_DynPhos_QPyroGlu_stat_4plex_iodo_hcd.xml
2020-08-20 01:57:56 PM Static, 57.0215 on C
2020-08-20 01:57:56 PM Static, 144.1021 on K
2020-08-20 01:57:56 PM Dynamic, 79.9799 on STY
2020-08-20 01:57:56 PM Dynamic, 15.9949 on M
2020-08-20 01:57:56 PM Dynamic, -17.03056 on Q
2020-08-20 01:57:56 PM Terminus, 144.1021 on <
2020-08-20 01:57:56 PM Caching data in CPTAC_CompREF_00_iTRAQ_NiNTA_01b_22Mar12_Lynx_12-02-29_msgfplus_fht.txt
2020-08-20 01:57:56 PM Output directory: F:\...\AScore\AScore_Console\Data\MSGFPlus_ITRAQ4plex_CDTA\Results_QPyroGlu
2020-08-20 01:57:56 PM Opening CPTAC_CompREF_00_iTRAQ_NiNTA_01b_22Mar12_Lynx_12-02-29_dta.txt
2020-08-20 01:57:56 PM Filtering using MSGF_SpecProb <= 1.0E-07
2020-08-20 01:57:56 PM Dataset name: CPTAC_CompREF_00_iTRAQ_NiNTA_01b_22Mar12_Lynx_12-02-29
2020-08-20 01:57:56 PM Warning: Scan 18490 not found in spectra file for peptide R.SKEGHSLEMENENLVENGADS*DEDDNSFLKQQS*PQEPK.S
2020-08-20 01:57:57 PM Warning: Scan 22697 not found in spectra file for peptide K.TLSVAAAFNEDEDS*EPEEM@PPEAK.M
2020-08-20 01:57:58 PM Warning: Scan 23825 not found in spectra file for peptide R.GIQYIDLSSDS*EDVVSPNCSNTVQEK.T
2020-08-20 01:57:58 PM Warning: Scan 18683 not found in spectra file for peptide K.AGGGDLLLPPS*PK.V
2020-08-20 01:57:58 PM Warning: Scan 18459 not found in spectra file for peptide K.AGGGDLLLPPS*PK.V
2020-08-20 01:57:58 PM Warning: Scan 24610 not found in spectra file for peptide K.IVEPEVVGES*DS*EVEGDAWR.M
2020-08-20 01:57:58 PM Warning: Scan 18586 not found in spectra file for peptide K.AGGGDLLLPPS*PK.V
2020-08-20 01:57:59 PM Warning: Scan 20029 not found in spectra file for peptide K.GGLLTSEEDSGFSTS*PKDNSLPK.K
2020-08-20 01:58:01 PM Warning: Scan 18470 not found in spectra file for peptide R.SKEGHSLEMENENLVENGADS*DEDDNSFLKQQS*PQEPK.S
2020-08-20 01:58:01 PM Warning: Scan 18461 not found in spectra file for peptide R.SKEGHSLEMENENLVENGADS*DEDDNS*FLKQQSPQEPK.S
2020-08-20 01:58:01 PM Warning: Scan 18594 not found in spectra file for peptide R.SKEGHSLEMENENLVENGADS*DEDDNS*FLKQQSPQEPK.S
2020-08-20 01:58:02 PM Warning: Scan 22781 not found in spectra file for peptide K.TLSVAAAFNEDEDS*EPEEM@PPEAK.M
2020-08-20 01:58:02 PM Warning: Scan 23859 not found in spectra file for peptide R.GIQYIDLSSDS*EDVVSPNCSNTVQEK.T
2020-08-20 01:58:02 PM Warning: Scan 24483 not found in spectra file for peptide K.IVEPEVVGES*DS*EVEGDAWR.M
2020-08-20 01:58:02 PM Warning: Scan 22682 not found in spectra file for peptide K.TLSVAAAFNEDEDS*EPEEM@PPEAK.M
2020-08-20 01:58:02 PM Warning: Scan 22630 not found in spectra file for peptide K.TLSVAAAFNEDEDS*EPEEM@PPEAK.M
2020-08-20 01:58:02 PM Warning: Scan 18497 not found in spectra file for peptide R.SKEGHSLEMENENLVENGADS*DEDDNSFLKQQS*PQEPK.S
2020-08-20 01:58:02 PM Warning: Scan 22903 not found in spectra file for peptide K.TLSVAAAFNEDEDS*EPEEM@PPEAK.M
2020-08-20 01:58:03 PM Warning: Scan 18495 not found in spectra file for peptide R.SKEGHSLEMENENLVENGADS*DEDDNSFLKQQS*PQEPK.S
2020-08-20 01:58:03 PM Warning: Scan 15673 not found in spectra file for peptide K.SLFTSQPS*GEAEAPQTTDSPTTK.V
2020-08-20 01:58:03 PM Warning: Scan 18653 not found in spectra file for peptide R.SKEGHSLEMENENLVENGADS*DEDDNSFLKQQS*PQEPK.S
2020-08-20 01:58:03 PM Warning: Scan 20914 not found in spectra file for peptide R.DNLTLWTSDTQGDEAEAGEGGEN.-
2020-08-20 01:58:04 PM Warning: Scan 20072 not found in spectra file for peptide K.RPSFSST*PVISPAPNSTPANSNTNSNSSLITSQDAVER.A
2020-08-20 01:58:04 PM Warning: Scan 20167 not found in spectra file for peptide K.TENGTCPSPPQPLS*PAAALGSGS*AAAVPK.I
2020-08-20 01:58:04 PM Warning: Scan 24749 not found in spectra file for peptide K.IVEPEVVGES*DS*EVEGDAWR.M
2020-08-20 01:58:04 PM Warning: Scan 24278 not found in spectra file for peptide R.TTQSMQDFPVVDS*EEEAEEEFQK.E
2020-08-20 01:58:04 PM Warning: Scan 16459 not found in spectra file for peptide K.TTTAAAVASTGPS*SRSPSTLLPK.K
2020-08-20 01:58:04 PM Warning: Scan 20112 not found in spectra file for peptide K.TENGTCPS*PPQPLS*PAAALGSGSAAAVPK.I
2020-08-20 01:58:04 PM Writing 4,449 rows to F:\...\R..\CPTAC_CompREF_00_iTRAQ_NiNTA_01b_2.._12-02-29_msgfplus_fht_ascore.txt
2020-08-20 01:58:04 PM Stats by fragmentation ion type:
2020-08-20 01:58:04 PM CID peptides: 0
2020-08-20 01:58:04 PM ETD peptides: 0
2020-08-20 01:58:04 PM HCD peptides: 0
2020-08-20 01:58:07 PM AScore Complete
2020-08-20 01:58:07 PM Skipped 35 PHRP results without an AScore result
2020-08-20 01:58:07 PM Results merged; new file: F:\...\R..\CPTAC_CompREF_00_iTRAQ_NiNTA_01b_2..02-29_msgfplus_fht_WithAScore.txt
34 changes: 17 additions & 17 deletions AScore_Console/Data/MSGFPlus_ITRAQ4plex_mzML/LogFile.txt
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Original file line number Diff line number Diff line change
@@ -1,17 +1,17 @@
2020-08-20 11:04:50 AM Caching data in Dataset_W_S2_Fr_04_2May17_msgfplus_syn.txt
2020-08-20 11:04:50 AM Output directory: F:\Documents\Projects\JoshAldrich\AScore\AScore_Console\Data\MSGFPlus_ITRAQ4plex_mzML
2020-08-20 11:04:50 AM Opening Dataset_W_S2_Fr_04_2May17.mzML
2020-08-20 11:04:51 AM Filtering using MSGF_SpecProb <= 1.0E-07
2020-08-20 11:04:51 AM Dataset name: Dataset_W_S2_Fr_04_2May17
2020-08-20 11:04:51 AM Loaded modifications from: Dataset_W_S2_Fr_04_2May17_msgfplus_syn_ModSummary.txt
2020-08-20 11:04:51 AM Static, 57.021465 on C
2020-08-20 11:04:51 AM Static, 229.162933 on K
2020-08-20 11:04:51 AM Dynamic, 15.994915 on M
2020-08-20 11:04:51 AM Terminus, 229.162933 on <
2020-08-20 11:04:55 AM Writing 344 rows to F:\...\MSGFPlus_ITRAQ4plex_m..\Dataset_W_S2_Fr_04_2May17_msgfplus_syn_ascore.txt
2020-08-20 11:04:55 AM Stats by fragmentation ion type:
2020-08-20 11:04:55 AM CID peptides: 0
2020-08-20 11:04:55 AM ETD peptides: 0
2020-08-20 11:04:55 AM HCD peptides: 344
2020-08-20 11:04:57 AM AScore Complete
2020-08-20 11:04:57 AM Results merged; new file: F:\...\MSGFPlus_ITRAQ4p..\Dataset_W_S2_Fr_04_2May17_msgfplus_syn_plus_ascore.txt
2020-08-20 01:58:05 PM Caching data in Dataset_W_S2_Fr_04_2May17_msgfplus_syn.txt
2020-08-20 01:58:05 PM Output directory: F:\...\AScore\AScore_Console\Data\MSGFPlus_ITRAQ4plex_mzML
2020-08-20 01:58:05 PM Opening Dataset_W_S2_Fr_04_2May17.mzML
2020-08-20 01:58:06 PM Filtering using MSGF_SpecProb <= 1.0E-07
2020-08-20 01:58:06 PM Dataset name: Dataset_W_S2_Fr_04_2May17
2020-08-20 01:58:06 PM Loaded modifications from: Dataset_W_S2_Fr_04_2May17_msgfplus_syn_ModSummary.txt
2020-08-20 01:58:06 PM Static, 57.021465 on C
2020-08-20 01:58:06 PM Static, 229.162933 on K
2020-08-20 01:58:06 PM Dynamic, 15.994915 on M
2020-08-20 01:58:06 PM Terminus, 229.162933 on <
2020-08-20 01:58:10 PM Writing 344 rows to F:\...\MSGFPlus_ITRAQ4plex_m..\Dataset_W_S2_Fr_04_2May17_msgfplus_syn_ascore.txt
2020-08-20 01:58:10 PM Stats by fragmentation ion type:
2020-08-20 01:58:10 PM CID peptides: 0
2020-08-20 01:58:10 PM ETD peptides: 0
2020-08-20 01:58:10 PM HCD peptides: 344
2020-08-20 01:58:12 PM AScore Complete
2020-08-20 01:58:12 PM Results merged; new file: F:\...\MSGFPlus_ITRAQ4p..\Dataset_W_S2_Fr_04_2May17_msgfplus_syn_plus_ascore.txt

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