Normalize line endings

PNNL-Comp-Mass-Spec · Sep 11, 2017 · 94ff92d · 94ff92d
1 parent b4251b8
commit 94ff92d
Show file tree

Hide file tree

Showing 2 changed files with 25 additions and 27 deletions.
diff --git a/LcmsSpectator/Writers/Exporters/SpectrumPeakExporter.cs b/LcmsSpectator/Writers/Exporters/SpectrumPeakExporter.cs
@@ -7,8 +7,6 @@
 namespace LcmsSpectator.Writers.Exporters
 {
     using System.IO;
-    using System.Windows.Input;
-    using System.Windows.Shapes;
 
     using InformedProteomics.Backend.Data.Sequence;
     using InformedProteomics.Backend.Data.Spectrometry;
@@ -42,27 +40,27 @@ public SpectrumPeakExporter(string outputFile, IEnumerable<BaseIonType> baseIonT
             this.tolerance = tolerance ?? new Tolerance(10, ToleranceUnit.Ppm);
         }
 
-        public void Export(IList<PeakDataPoint> peakDataPoints, IProgress<ProgressData> progress = null)
-        {
-            using (var writer = new StreamWriter(this.outputFile))
-            {
-                // Write headers
-                writer.WriteLine("Monoisotopic Mass\tM/Z\tIntensity\tIonType\tCharge\tResidue");
-                foreach (var peakDataPoint in peakDataPoints)
-                {
-                    writer.WriteLine(
-                           "{0}\t{1}\t{2}\t{3}\t{4}\t{5}{6}",
-                           peakDataPoint.MonoisotopicMass,
-                           peakDataPoint.X,
-                           peakDataPoint.Y,
-                           peakDataPoint.IonType.BaseIonType.Symbol,
-                           peakDataPoint.IonType.Charge,
-                           peakDataPoint.Residue,
-                           peakDataPoint.Index);
-                }
-            }
-        }
-
+        public void Export(IList<PeakDataPoint> peakDataPoints, IProgress<ProgressData> progress = null)
+        {
+            using (var writer = new StreamWriter(this.outputFile))
+            {
+                // Write headers
+                writer.WriteLine("Monoisotopic Mass\tM/Z\tIntensity\tIonType\tCharge\tResidue");
+                foreach (var peakDataPoint in peakDataPoints)
+                {
+                    writer.WriteLine(
+                           "{0}\t{1}\t{2}\t{3}\t{4}\t{5}{6}",
+                           peakDataPoint.MonoisotopicMass,
+                           peakDataPoint.X,
+                           peakDataPoint.Y,
+                           peakDataPoint.IonType.BaseIonType.Symbol,
+                           peakDataPoint.IonType.Charge,
+                           peakDataPoint.Residue,
+                           peakDataPoint.Index);
+                }
+            }
+        }
+
         public void Export(IList<PrSm> ids, IProgress<ProgressData> progress = null)
         {
             progress = progress ?? new Progress<ProgressData>();
@@ -142,7 +140,7 @@ public void Export(PrSm id, string outputFilePath)
                 writer.WriteLine(this.GetHeaders());
                 foreach (var match in matches)
                 {
-                    writer.WriteLine(this.GetLine(match)); 
+                    writer.WriteLine(this.GetLine(match));
                 }
             }
         }
@@ -169,7 +167,7 @@ private IEnumerable<Tuple<Peak, PeakDataPoint>> GetMappedPeaks(PrSm id)
         {
             var lcms = id.LcMs;
             var fragSequence = id.GetFragmentationSequence();
-            var fragments = lcms.GetMsLevel(id.Scan) == 2 ? 
+            var fragments = lcms.GetMsLevel(id.Scan) == 2 ?
                             fragSequence.GetFragmentLabels(this.ionTypes.Where(ionType => ionType.Charge <= id.Charge).ToList()) :
                             fragSequence.GetChargePrecursorLabels();
             var spectrum = lcms.GetSpectrum(id.Scan, true);
@@ -207,7 +205,7 @@ private string GetLine(Tuple<Peak, PeakDataPoint> match)
             var peak = match.Item1;
             var peakDataPoint = match.Item2;
 
-            if (peakDataPoint != null && peakDataPoint.IonType != null)
+            if (peakDataPoint != null && peakDataPoint.IonType != null)
             {
                 line = string.Format(
                                      "{0}\t{1}\t{2}\t{3}\t{4}\t{5}\t{6}",

diff --git a/LcmsSpectatorTests/XicPlotTest.cs b/LcmsSpectatorTests/XicPlotTest.cs
@@ -1,4 +1,4 @@
-using System;
+using System;
 using System.Collections.Generic;
 using System.IO;
 using System.Linq;