Pumas Bayesian Workshop

These are the slides and code for the Pumas Bayesian Workshop.

Double your think time!

Outline

• Participants introduction
• Why Bayesian?
• Introduction to probability and Bayesian statistics
• Hands on: getting started with Pumas on the cloud
• Bayesian PK model
• Hands-on
  • Pumas Data Representation (NMTRAN datasets and Population)
  • Pumas model macro and dynamics block
  • Bayesian PK model in Pumas
• Bayesian Logistic Regression
• Hands-on: Bayesian logistic regression in Pumas
• Hierarchical Models in Pumas
• Bayesian PopPK Model
• Hands-on: population PK models
• Bayesian PKPD model
• Hands-on: population PKPD models
• Posterior predictions and simulations
• MCMC, marginal MCMC and NUTS
• Convergence diagnostics
• What to do if MCMC fails?
• Hands-on: diagnostics, simulations, post-processing and plots
• Crossvalidation and model evaluation
• Hands-on: cross-validation