Bump various test dependencies #1282

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Run time

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Job	Run time
flake8	8s
pytest suite (ubuntu-latest, 3.9)	17s
mypy (3.9)	9s
pytest suite (ubuntu-latest, 3.10)	17s
mypy (3.13)	9s
pytest suite (ubuntu-latest, 3.11)	22s
pytest suite (ubuntu-latest, 3.12)	19s
pytest suite (ubuntu-latest, 3.13)	27s
pytest suite (macos-latest, 3.9)	17s
pytest suite (macos-latest, 3.10)	18s
pytest suite (macos-latest, 3.11)	16s
pytest suite (macos-latest, 3.12)	18s
pytest suite (macos-latest, 3.13)	35s
pytest suite (windows-latest, 3.9)	51s
pytest suite (windows-latest, 3.10)	48s
pytest suite (windows-latest, 3.11)	46s
pytest suite (windows-latest, 3.12)	51s
pytest suite (windows-latest, 3.13)	1m 27s
	8m 35s