Add support for saving segments in a single file #33
Workflow file for this run
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| name: C/C++ CI macOS | |
| # We only run this on pushes and pull requests to master branch, | |
| # as well as on manual trigger (workflow_dispatch, useful if workflow | |
| # has been disabled earlier). | |
| on: | |
| push: | |
| branches: [ "master" ] | |
| pull_request: | |
| branches: [ "master" ] | |
| workflow_dispatch: | |
| jobs: | |
| build-macos: | |
| runs-on: macos-latest | |
| # So far, a full superbuild (no caches) has always been complete in < 45 minutes. | |
| timeout-minutes: 45 | |
| # Checkout and install python | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.7.14' | |
| # Install build tools (cmake and ninja) as well as jsondiff | |
| - name: "Install jsondiff" | |
| run: pip install jsondiff | |
| - name: "Install cmake" | |
| run: | | |
| cmake --version | |
| echo ${PATH} | |
| wget --no-check-certificate https://github.com/ninja-build/ninja/releases/download/v1.7.2/ninja-mac.zip | |
| unzip ninja-mac.zip && sudo cp ninja /usr/local/bin/ | |
| # Make sure all directories required for computing the hash actually exist | |
| - name: "Prepare cache directories" | |
| run: | | |
| mkdir -p ${{ github.workspace }}/dcmqi-build/DCMTK-build | |
| mkdir -p ${{ github.workspace }}/dcmqi-build/DCMTK | |
| mkdir -p ${{ github.workspace }}/dcmqi-build/ITK | |
| mkdir -p ${{ github.workspace }}/dcmqi-build/ITK-build | |
| mkdir -p ${{ github.workspace }}/dcmqi-build/zlib-install | |
| # Prepare the cache directories, which are DCMTK/ITK source and build directories | |
| # since dcmqi build later requires DCMTK/ITK headers from source, and libraries from | |
| # build directories. For ZLIB, installation directory is sufficient since it contains | |
| # both, headers and libraries. | |
| - name: Check for cached DCMTK, ITK and ZLIB | |
| id: cache-dcmtk-itk-zlib | |
| uses: actions/cache@v3 | |
| env: | |
| cache-name: cache-dcmtk-itk-zlib | |
| with: | |
| # The recursive content of these directories goes into the cache | |
| path: | | |
| ${{ github.workspace }}/dcmqi-build/DCMTK | |
| ${{ github.workspace }}/dcmqi-build/DCMTK-build | |
| ${{ github.workspace }}/dcmqi-build/ITK | |
| ${{ github.workspace }}/dcmqi-build/ITK-build | |
| ${{ github.workspace }}/dcmqi-build/zlib-install | |
| # The hash key decides whether cache entry is out of date or can be used. | |
| # We use the hash of the CMakeExternals files to decide whether | |
| # we must rebuild it. Also a change in the OS will trigger cash rebuild. | |
| # A hashkey will have the form of macOS-build-cache-dcmtk-itk-<hash> | |
| key: ${{ runner.os }}-build-${{ env.cache-name }}-${{ hashFiles('CMakeExternals/DCMTK.cmake','CMakeExternals/ITK.cmake', 'CMakeExternals/zlib.cmake') }} | |
| # Below is the key pattern that defines, which cache entries stored on the | |
| # GitHub repository will match our key. We simply use the name of OS and | |
| # name of the cache, i.e. every cache entry with key pattern | |
| # macOS-build-cache-dcmtk-itk-<hash> will match. | |
| restore-keys: | | |
| ${{ runner.os }}-build-${{ env.cache-name }}- | |
| # This is step executed if a cache entry is found | |
| - name: "Configure dcmqi w/ cached DCMTK/ITK/ZLIB" | |
| if: ${{ steps.cache-dcmtk-itk-zlib.outputs.cache-hit == 'true' }} | |
| # Make sure to set ITK, DCMTK and ZLIB directories to dcmqi cmake configuration step | |
| run: | | |
| cd ${{ github.workspace }}/dcmqi-build && cmake -G Ninja ${{ github.workspace }} -DDCMTK_DIR=${{ github.workspace }}/dcmqi-build/DCMTK-build -DITK_DIR=${{ github.workspace }}/dcmqi-build/ITK-build -DZLIB_ROOT=${{ github.workspace }}/dcmqi-build/zlib-install | |
| # If we don't have a matching cache entry, configure for full rebuild (regular dcmqi superbuild) | |
| - name: "Configure dcmqi w/o cached DCMTK/ITK/ZLIB" | |
| if: ${{ steps.cache-dcmtk-itk-zlib.outputs.cache-hit != 'true' }} | |
| run: | | |
| cd ${{ github.workspace }}/dcmqi-build && cmake -G Ninja ${{ github.workspace }} | |
| # Build dcmqi | |
| - name: "Build dcmqi" | |
| run: | | |
| cd ${{ github.workspace }}/dcmqi-build && ninja | |
| # ...and finally package it. | |
| - name: "Package dcmqi" | |
| # Only run if the event is not a pull request and the repository owner is QIICR. | |
| # The latter is to prevent forks from publishing packages even if the owner's token | |
| # would have sufficient privileges. | |
| if: ${{ (github.event_name != 'pull_request') && (github.repository_owner == 'QIICR')}} | |
| run: | | |
| cd ${{ github.workspace }}/dcmqi-build/dcmqi-build && ninja package | |
| - name: Publish package | |
| # Only run if the event is not a pull request and the repository owner is QIICR. | |
| # The latter is to prevent forks from publishing packages even if the owner's token | |
| # would have sufficient privileges. | |
| if: ${{ (github.event_name != 'pull_request') && (github.repository_owner == 'QIICR')}} | |
| run: | | |
| pip install -U "scikit-ci-addons>=0.22.0" | |
| ci_addons publish_github_release QIICR/dcmqi \ | |
| --prerelease-packages ${{ github.workspace }}/dcmqi-build/dcmqi-build/dcmqi-*-mac-*.tar.gz \ | |
| --prerelease-packages-clear-pattern "dcmqi-*-mac-*" \ | |
| --prerelease-packages-keep-pattern "*<COMMIT_DATE>-<COMMIT_SHORT_SHA>*" \ | |
| --exit-success-if-missing-token --token ${{ secrets.GA_TOKEN }} |