ensuring synonyms and curies are lists

RTXteam · Oct 7, 2024 · 4aeb888 · 4aeb888
1 parent 3baa844
commit 4aeb888
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/code/ARAX/ARAXQuery/Filter_KG/remove_nodes.py b/code/ARAX/ARAXQuery/Filter_KG/remove_nodes.py
@@ -162,9 +162,9 @@ def _is_general_concept(self, node):
         if not node['attributes']:
             return False
         for attribute in node['attributes']:
-            if attribute['attribute_type_id'] == 'biolink:xref':
+            if attribute['attribute_type_id'] == 'biolink:xref' and isinstance(attribute.get('value', []),list):
                 curies.update(map(str.lower, attribute.get('value', [])))
-            if attribute['attribute_type_id'] == 'biolink:synonym':
+            if attribute['attribute_type_id'] == 'biolink:synonym' and  isinstance(attribute.get('value', []),list):
                 synonyms.update(map(str.lower, attribute.get('value', [])))
         if node['name']:
                 synonyms.add(node['name'].lower())