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Update README.md
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saramsey authored Jun 30, 2023
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Expand Up @@ -8,7 +8,7 @@ You need to make your environment point to the particular KG2pre version and syn

1. **Fetch the latest code**: Do `git pull origin [your-branch]` or the like to make sure you're running the latest code in whatever branch you're using.
1. **Point to the right KG2 version**: Make sure that `RTX/code/config_dbs.json` is pointing to the KG2pre Neo4j endpoint you want to use and the synonymizer you want to use (i.e., the one made from the KG2 version you'll be using).
1. **Put your synonymizer into place**: Put a copy of the synonymizer you want to use (e.g., `node_synonymizer_v1.0_KG2.6.7.sqlite`) into `RTX/code/ARAX/NodeSynonymizer/`.
1. **Put your synonymizer into place**: Put a copy of the synonymizer you want to use (e.g., `node_synonymizer_v1.0_KG2.6.7.sqlite`) into `RTX/code/ARAX/NodeSynonymizer/`. You'll probably want to `sftp -C` the file from `rtxconfig@arax-databases.rtx.ai`.
1. **Activate virtual env**: Make sure to use a Python version [compatible with ARAX](https://github.com/RTXteam/RTX/wiki/Dev-info#setting-up-for-local-dev-work-on-arax) and run `pip install -r requirements.txt` as needed.
* _For ARAX team: If you're using `ngdbuild.rtx.ai`, a virtual env already exists that you can activate like so: `source ~/ngd_venv/bin/activate`_
1. **Turn on KG2pre neo4j**: If the KG2pre neo4j instance hosting the KG2 version you're building this NGD database from is not already running, turn it on and start neo4j. (e.g., do `ssh ubuntu@kg2endpointX.rtx.ai`, and then `sudo service neo4j start`)
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