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CSE 282 Bioinformatics Algorithms Project

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TransTracker

CSE 282 Bioinformatics Algorithms Project

Collaborators:

  • Chaohui Li
  • Laurel Li
  • Mason Kellogg

We proposed a multipartite graph model (with DNA sequences as parts and potential TSDs as nodes) that creatively represents a fungal DNA population. To decipher the historical movement of a transposon in a population, we designed two methods based on DFS and ILP to reconstruct the optimal traversing path in the multipartite graph.

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CSE 282 Bioinformatics Algorithms Project

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  • Python 100.0%