Merge branch 'aviti-manifest-fix' of github.com:kedhammar/scilifelab_…

…epps into aviti-manifest-fix
SciLifeLab · Sep 12, 2024 · 6b6138f · 6b6138f
2 parents 036d79d + 3e9467f
commit 6b6138f
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diff --git a/VERSIONLOG.md b/VERSIONLOG.md
@@ -1,9 +1,13 @@
 # Scilifelab_epps Version Log
 
-## 20240912.2
+## 20240912.3
 
 Generate composite run manifests for AVITI based on index lengths.
 
+## 20240912.2
+
+Support AVITI protocols for lobgook and comments_to_RN
+
 ## 20240912.1
 
 Update AVITI run stats parser to handle multiple lanes

diff --git a/data/logbook_data.py b/data/logbook_data.py
@@ -241,6 +241,12 @@
             "details": ["Processname"],
         }
     },
+    "Library Normalization (AVITI) v1.0": {
+        "lims_instrument": {
+            "dest_file": ["Bravo", "Mosquito"],
+            "details": ["Processname"],
+        }
+    },
     "Library Normalization (HiSeq X) 1.0": {
         "lims_instrument": {
             "dest_file": ["Bravo", "Mosquito"],
@@ -404,6 +410,12 @@
             "details": ["Processname"],
         }
     },
+    "Pre-Pooling (AVITI) v1.0": {
+        "lims_instrument": {
+            "dest_file": ["Bravo", "Mosquito"],
+            "details": ["Processname"],
+        }
+    },
     "Pre-Pooling (Illumina SBS) 4.0": {
         "lims_instrument": {
             "dest_file": ["Bravo", "Mosquito"],

diff --git a/scripts/comments_to_running_notes.py b/scripts/comments_to_running_notes.py
@@ -75,6 +75,7 @@ def categorization(process_name):
         "Illumina Sequencing (NextSeq) v1.0": "Flowcell",
         "Intermediate QC": "",
         "Library Normalization": "",
+        "Library Normalization (AVITI) v1.0": "",
         "Library Normalization (Illumina SBS) 4.0": "",
         "Library Normalization (MiSeq) 4.0": "",
         "Library Normalization (NextSeq) v1.0": "",
@@ -110,6 +111,7 @@ def categorization(process_name):
         "ONT QC Setup Workset/Plate": "",
         "ONT QC Start Sequencing": "Flowcell",
         "Pre-Pooling": "",
+        "Pre-Pooling (AVITI) v1.0": "",
         "Pre-Pooling (Illumina SBS) 4.0": "",
         "Pre-Pooling (MiSeq) 4.0": "",
         "Pre-Pooling (NextSeq) v1.0": "",
@@ -142,6 +144,7 @@ def categorization(process_name):
         "Size Selection (Caliper XT) 1.0": "Workset",
         "Size Selection (Pippin)": "Workset",
         "Size Selection (Robocut)": "Workset",
+        "Sort AVITI Samples v1.0": "",
         "Sort HiSeq Samples (HiSeq) 4.0": "",
         "Sort HiSeq X Samples (HiSeq X) 1.0": "",
         "Sort MiSeq Samples (MiSeq) 4.0": "",