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ENH: Initial support of the arc beam sequence #215

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ENH: Initial support of the arc beam sequence #215

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Commits on Aug 10, 2022

  1. ENH: Initial beam arc sequence

    Michael Colonel committed Aug 10, 2022
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  2. BUG: Fix contour end-capping in VTK 9.0 

    In VTK <= 8.2, unused points weren't used in bounds calculation, while they are used in VTK >= 9.0. This caused issues with the creation of the end cap contour, since the image extent was incorrect. Fixed by removing unused points.

Fixes a number of failing DVH tests.
    @Sunderlandkyl
    Sunderlandkyl authored and Mikhail Polkovnikov committed Aug 10, 2022
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  3. BUG: Fix failing Isodose module generic tests 

    Fix crash that is caused by the fact that ApplicationLogic is not set for generic tests. The "CopyNode" function is static, so the issue was fixed by using the method statically.
    @Sunderlandkyl
    Sunderlandkyl authored and Mikhail Polkovnikov committed Aug 10, 2022
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  4. BUG: Fix failing Beams module generic tests 

    Fix crash by checking if beamsLogic exists before accessing.
    @Sunderlandkyl
    Sunderlandkyl authored and Mikhail Polkovnikov committed Aug 10, 2022
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  5. BUG: Fix DicomRtImportTest 

    The test data was no longer available since "slicer.kitware.com/midas3" was retired in August 2021. Fixed by pointing the URL to the raw files in SlicerRTData.
    @Sunderlandkyl
    Sunderlandkyl authored and Mikhail Polkovnikov committed Aug 10, 2022
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  6. BUG: Update PlmProtonDoseEngineTest data url

    @Sunderlandkyl
    Sunderlandkyl authored and Mikhail Polkovnikov committed Aug 10, 2022
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  7. BUG: Fix qSlicerDrrImageComputationModuleGenericTest on Windows 

    On Windows, CLI build directories were not added to the list of additional module directories. This resulted in missing CLI modules, causing qSlicerDrrImageComputationModuleGenericTest to fail.
    @Sunderlandkyl
    Sunderlandkyl authored and Mikhail Polkovnikov committed Aug 10, 2022
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  8. BUG: Fix failing PlmProtonDoseEngineTest 

    The default source-axis distance and aperture distance was invalid for proton dose calculation.
Fixed by changing the SAD back to the original default.
    @Sunderlandkyl
    Sunderlandkyl authored and Mikhail Polkovnikov committed Aug 10, 2022
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  9. BUG: Update URL in BatchStructureSetConversion test

    @Sunderlandkyl
    Sunderlandkyl authored and Mikhail Polkovnikov committed Aug 10, 2022
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  10. BUG: Fix failing vtkSlicerIsodoseModuleLogicTest_EclipseProstate 

    The isodose surface generated with VTK9 is slightly different around the holes in the bottom of the mesh. This causes a small volume difference between the baseline and generated surface. The surface is the same in all other areas, so there doesn't seem to be an issue. Fixed by updating the baseline.
    @Sunderlandkyl
    Sunderlandkyl authored and Mikhail Polkovnikov committed Aug 10, 2022
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  11. BUG: Fix ctCreate not running if runCTCreateAndDoseXYZnrcIndex selected

    @Sunderlandkyl
    Sunderlandkyl authored and Mikhail Polkovnikov committed Aug 10, 2022
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  12. ENH: Update window/level of relative isodose to match color table

    @Sunderlandkyl
    Sunderlandkyl authored and Mikhail Polkovnikov committed Aug 10, 2022
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  13. BUG: Fix crash when showing isodose scalar bar 

    Due to updates in VTK, TextActorAnchors needs to be initialized in LayoutTicks to not cause a crash.
    @Sunderlandkyl
    Sunderlandkyl authored and Mikhail Polkovnikov committed Aug 10, 2022
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  14. COMP: Fix compile errors with Cxx17 

    Update Plastimatch to replace std::auto_ptr with std::unique_ptr.
Change use of std::not1 and std::ptr_fun to use a lambda function instead.

Fix SlicerRt#212
    @Sunderlandkyl
    Sunderlandkyl authored and Mikhail Polkovnikov committed Aug 10, 2022
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  15. COMP: Fix C++17 dynamic exception error

    Mikhail Polkovnikov committed Aug 10, 2022
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  16. COMP: Fix C++17 compile errors on Mac/Linux 

    Update plastimatch to remove dynamic exception compile errors.

Re SlicerRt#213
    @Sunderlandkyl
    Sunderlandkyl authored and Mikhail Polkovnikov committed Aug 10, 2022
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  17. COMP: Update plastimatch to Fix C++17 compile errors on Mac 

    Update plastimatch to remove register storage specifier.

Re SlicerRt#213
    @Sunderlandkyl
    Sunderlandkyl authored and Mikhail Polkovnikov committed Aug 10, 2022
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  18. ENH: Add option to OrthovoltageDoseEngine to erase dose outside segment

    @Sunderlandkyl
    Sunderlandkyl authored and Mikhail Polkovnikov committed Aug 10, 2022
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  19. ENH: Dynamic arc beam sequence GUI and logic upgrades 

    1. Logic debug information was removed
2. ExternalBeamPlanning module description file was created
    Mikhail Polkovnikov committed Aug 10, 2022
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