Welcome on the training_SV_teaching github repository of the Southgreen Bioinformatics Platform

Welcome to the four-day training course "Introduction to SNP and SV detection analysis using short and long reads" of South Green platform.

This tutorial will guide you through the typical steps of detection of SNP and SV detection using long and short reads.

In session 2022 (see 2022 branch), we have created a Virtual Machine IFB Biosphere containig all tools need to reproduce this training.

You can our VM "CoursAnalysesSVSG" it at the RAINBio catalogue: https://biosphere.france-bioinformatique.fr/catalogue/

Data used are hosted in a i-Trop server https://bioinfo.ird.fr/.

Thanks

Thanks to i-Trop IRD plateform for support on docker VM creation and data stockage.

Special thanks to IFB for support and availability of VM on Biosphere !

License

The resource material is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/4.0/