Merge pull request #45 from Sydney-Informatics-Hub/fix

docs housekeeping

docs/extra.css

@@ -0,0 +1,6 @@
+:root {
+  --md-primary-fg-color:        #E64626;
+  --md-primary-fg-color--dark:  #ac2d14;
+  --md-primary-fg-color--light: #ee806b;
+  --md-typeset-color:           #424242;
+}

docs/index.md

@@ -64,4 +64,4 @@ at the end of the workshop. Help us help you! 😁
 
 This workshop event and accompanying materials were developed by the Sydney Informatics Hub, University of Sydney in partnership with Seqera. The workshop was enabled through the Australian BioCommons - [BioCLI Platforms Project](https://www.biocommons.org.au/biocli) (NCRIS via Bioplatforms Australia). 
 
-![](./part2/img/00_logos.png)
+![](./img/logos.png)

docs/part2/04_multiqc.md

@@ -237,7 +237,7 @@ workflow {
 
     // Define the multiqc input channel
     FASTQC.out[0]
-        .mix(QUANTIFICATION[0])
+        .mix(QUANTIFICATION.out[0])
         .collect()
         .view()
 
@@ -281,7 +281,7 @@ touches to the workflow scope.
        
             // Define the multiqc input channel
             multiqc_in = FASTQC.out[0]
-                .mix(QUANTIFICATION[0])
+                .mix(QUANTIFICATION.out[0])
                 .collect()
 
         }
@@ -303,7 +303,7 @@ touches to the workflow scope.
        
             // Define the multiqc input channel
             multiqc_in = FASTQC.out[0]
-                .mix(QUANTIFICATION[0])
+                .mix(QUANTIFICATION.out[0])
                 .collect()
 
             // Run the multiqc step with the multiqc_in channel

mkdocs.yml

@@ -28,6 +28,9 @@ theme:
   name: material
   logo: assets/usyd-logo.png
 
+extra_css:
+  - extra.css
+
 markdown_extensions:
   - admonition
   - pymdownx.details