V1.1 Anaxyrus

Merge pull request #252 from arnaudbore/master

Update methodology + documentation

V1.1-beta Anaxyrus

New tasks:

• An atlas section has been created: atlas registration will now be performed as a separate task.
• dcm2toad: the tool to convert your data from dicom to toad has been updated. You can also change your output folder name using a text file.
• Miscellaneous: minor bugs and typos have been fixed.
• Documentation was also updated relative to the new tasks.

Adenomus

TOAD aims to offer an automated pipeline to process diffusion neuroimaging data. The toolkit uses a large combination of tools (Matlab, FreeSurfer, FSL, Mrtrix) to clean the data, compute different masks, segment maps and then compute fibers, tensors and their associated metrics such as Fractional Anisotropy (FA) and so on.

Unbowed, Unbent, Unbroken

Merge pull request #75 from cbedetti/master

Rewrote 08-snr and correct the bug of issue#70

super beta

Merge pull request #52 from mathieudesro/master

Improve code stability

unftoad, fieldmap. take five.

Merge pull request #41 from mathieudesro/master

improve unf2toad conversion tools as issue #40

Beta.

Merge pull request #28 from mathieudesro/master

add nearestneighbour to flirt, create an environment file

Still alpha but closer to a beta release

Merge pull request #15 from mathieudesro/master

add nlmeans algorithm to denoising task

Alpha release with fielmap capability

Merge pull request #12 from cbedetti/master

Adapt QA with the mriutil method extractFirstB0FromDwi

Alpha release

Merge pull request #7 from mathieudesro/master

Copy FreeSurferColorLUT_ItkSnap.txt into masking task