Updating Artic #41
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| name: Update Artic | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '30 5 * * TUE' | |
| run-name: Updating Artic | |
| jobs: | |
| update: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Get latest artic release | |
| uses: rez0n/actions-github-release@main | |
| id: latest_artic | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| repository: artic-network/fieldbioinformatics | |
| type: "stable" | |
| - name: Get latest medaka release | |
| uses: rez0n/actions-github-release@main | |
| id: latest_medaka | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| repository: nanoporetech/medaka | |
| type: "stable" | |
| - name: Remove V from artic | |
| id: strip_artic | |
| run: | | |
| version=$(echo "${{ steps.latest_artic.outputs.release }}" | sed 's/V//g' | sed 's/v//g' ) | |
| echo "The version is $version" | |
| echo "version=$version" >> $GITHUB_OUTPUT | |
| - name: Remove V from medaka | |
| id: strip_medaka | |
| run: | | |
| version=$(echo "${{ steps.latest_medaka.outputs.release }}" | sed 's/V//g' | sed 's/v//g' ) | |
| echo "The version is $version" | |
| echo "version=$version" >> $GITHUB_OUTPUT | |
| - name: Get current date | |
| id: date | |
| run: | | |
| date=$(date '+%Y-%m-%d') | |
| echo "the date is $date" | |
| echo "date=$date" >> $GITHUB_OUTPUT | |
| - name: pull repo | |
| uses: actions/checkout@v3 | |
| - name: check paths | |
| run: ls && ls ./artic | |
| - name: Set up Docker Buildx | |
| id: buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - name: Login to Quay | |
| uses: docker/login-action@v2 | |
| with: | |
| registry: quay.io | |
| username: ${{ secrets.QUAY_USERNAME }} | |
| password: ${{ secrets.QUAY_PASSWORD }} | |
| - name: Build and push to Quay | |
| uses: docker/build-push-action@v3 | |
| with: | |
| file: ./artic/Dockerfile | |
| build-args: | | |
| ARTIC_VER=${{ steps.strip_artic.outputs.version }} | |
| MEDAKA_VER=${{ steps.strip_medaka.outputs.version }} | |
| push: true | |
| tags: quay.io/uphl/artic:${{ steps.strip_artic.outputs.version }}-${{ steps.strip_medaka.outputs.version }}-${{ steps.date.outputs.date }} | |
| - name: Build and push latest tag to Quay | |
| uses: docker/build-push-action@v3 | |
| with: | |
| file: ./artic/Dockerfile | |
| build-args: | | |
| ARTIC_VER=${{ steps.strip_artic.outputs.version }} | |
| MEDAKA_VER=${{ steps.strip_medaka.outputs.version }} | |
| push: true | |
| tags: quay.io/uphl/artic:latest |