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Updated through entire Website
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Made minor updates throughout the entire website, including renaming the Workflows sections.
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@blakemassey-usfws
blakemassey-usfws committed Oct 18, 2024
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28 changes: 14 additions & 14 deletions _quarto.yml
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Expand Up @@ -49,12 +49,12 @@ website:
- content/data_management_goals.qmd
- content/science_catalog.qmd
- content/projects_products_contacts.qmd
- section: "Workflow"
href: content/workflow/workflow_overview.qmd
- section: "Metadata Workflows"
href: content/metadata_workflows/metadata_workflows_overview.qmd
contents:
- content/workflow/metadata_from_scratch.qmd
- content/workflow/metadata_sciencebase_first.qmd
- content/workflow/metadata_editing_republishing.qmd
- content/metadata_workflows/from_scratch.qmd
- content/metadata_workflows/sciencebase_first.qmd
- content/metadata_workflows/editing_republishing.qmd
- content/settings.qmd
- section: "Metadata File Management"
href: content/metadata_file_management/metadata_file_management_overview.qmd
Expand Down Expand Up @@ -126,23 +126,23 @@ website:
- content/publishing/how_to.qmd
- content/publishing/republishing.qmd
- content/feedback_help.qmd
- content/glossary.qmd
- section: "Appendix"
href: content/appendix/appendix_overview.qmd
contents:
- section: "Developer Resources"
href: content/developer_resources/developer_resources_overview.qmd
contents:
- section: "Injector Script"
href: content/developer_resources/injector_script/injector_script_overview.qmd
contents:
- content/developer_resources/injector_script/example_funding.qmd
- content/developer_resources/injector_script/example_distribution_links.qmd
# - section: "Developer Resources"
# href: content/developer_resources/developer_resources_overview.qmd
# contents:
# - section: "Injector Script"
# href: content/developer_resources/injector_script/injector_script_overview.qmd
# contents:
# - content/developer_resources/injector_script/example_funding.qmd
# - content/developer_resources/injector_script/example_distribution_links.qmd
- section: "LCC Workflows"
href: content/appendix/lcc_workflows/lcc_workflows_overview.qmd
contents:
- content/appendix/lcc_workflows/cofunded_lcc_projects.qmd
- content/appendix/non_duplication_policy.qmd
- content/glossary.qmd

# - content/archiving.qmd
# - section: "Trouble-Shooting"
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4 changes: 4 additions & 0 deletions _site/assets/pencil-square.svg
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245 changes: 33 additions & 212 deletions _site/content/appendix/appendix_overview.html
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270 changes: 40 additions & 230 deletions _site/content/appendix/lcc_workflows/cofunded_lcc_projects.html
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264 changes: 37 additions & 227 deletions _site/content/appendix/lcc_workflows/lcc_workflows_overview.html
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70 changes: 20 additions & 50 deletions _site/content/appendix/non_duplication_policy.html
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Expand Up @@ -29,6 +29,7 @@
<script src="../../site_libs/quarto-search/fuse.min.js"></script>
<script src="../../site_libs/quarto-search/quarto-search.js"></script>
<meta name="quarto:offset" content="../../">
<link href="../../content/glossary.html" rel="next">
<link href="../../content/appendix/lcc_workflows/cofunded_lcc_projects.html" rel="prev">
<link href="../../favicon.png" rel="icon" type="image/png">
<script src="../../site_libs/quarto-html/quarto.js"></script>
Expand Down Expand Up @@ -150,29 +151,29 @@
</li>
<li class="sidebar-item sidebar-item-section">
<div class="sidebar-item-container">
<a href="../../content/workflow/workflow_overview.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Workflow</span></a>
<a href="../../content/metadata_workflows/metadata_workflows_overview.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Metadata Workflows</span></a>
<a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" aria-expanded="false" aria-label="Toggle section">
<i class="bi bi-chevron-right ms-2"></i>
</a>
</div>
<ul id="quarto-sidebar-section-1" class="collapse list-unstyled sidebar-section depth1 ">
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../../content/workflow/metadata_from_scratch.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Metadata From Scratch</span></a>
<a href="../../content/metadata_workflows/from_scratch.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">From Scratch</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../../content/workflow/metadata_sciencebase_first.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Metadata From ScienceBase</span></a>
<a href="../../content/metadata_workflows/sciencebase_first.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">ScienceBase First</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../../content/workflow/metadata_editing_republishing.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Metadata Editing / Re-Publishing</span></a>
<a href="../../content/metadata_workflows/editing_republishing.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Editing/Re-Publishing</span></a>
</div>
</li>
</ul>
Expand Down Expand Up @@ -521,12 +522,6 @@
<a href="../../content/feedback_help.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Feedback and Help</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../../content/glossary.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Glossary</span></a>
</div>
</li>
<li class="sidebar-item sidebar-item-section">
<div class="sidebar-item-container">
Expand All @@ -538,48 +533,14 @@
</div>
<ul id="quarto-sidebar-section-11" class="collapse list-unstyled sidebar-section depth1 show">
<li class="sidebar-item sidebar-item-section">
<div class="sidebar-item-container">
<a href="../../content/developer_resources/developer_resources_overview.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Developer Resources</span></a>
<a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-12" aria-expanded="false" aria-label="Toggle section">
<i class="bi bi-chevron-right ms-2"></i>
</a>
</div>
<ul id="quarto-sidebar-section-12" class="collapse list-unstyled sidebar-section depth2 ">
<li class="sidebar-item sidebar-item-section">
<div class="sidebar-item-container">
<a href="../../content/developer_resources/injector_script/injector_script_overview.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Injector Script</span></a>
<a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-13" aria-expanded="false" aria-label="Toggle section">
<i class="bi bi-chevron-right ms-2"></i>
</a>
</div>
<ul id="quarto-sidebar-section-13" class="collapse list-unstyled sidebar-section depth3 ">
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../../content/developer_resources/injector_script/example_funding.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Funding Example</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../../content/developer_resources/injector_script/example_distribution_links.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Distribution Links Example</span></a>
</div>
</li>
</ul>
</li>
</ul>
</li>
<li class="sidebar-item sidebar-item-section">
<div class="sidebar-item-container">
<a href="../../content/appendix/lcc_workflows/lcc_workflows_overview.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">LCC Workflows</span></a>
<a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-14" aria-expanded="false" aria-label="Toggle section">
<a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-12" aria-expanded="false" aria-label="Toggle section">
<i class="bi bi-chevron-right ms-2"></i>
</a>
</div>
<ul id="quarto-sidebar-section-14" class="collapse list-unstyled sidebar-section depth2 ">
<ul id="quarto-sidebar-section-12" class="collapse list-unstyled sidebar-section depth2 ">
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../../content/appendix/lcc_workflows/cofunded_lcc_projects.html" class="sidebar-item-text sidebar-link">
Expand All @@ -596,6 +557,12 @@
</li>
</ul>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../../content/glossary.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Glossary</span></a>
</div>
</li>
</ul>
</div>
</nav>
Expand Down Expand Up @@ -1174,6 +1141,9 @@ <h4 class="anchored" data-anchor-id="sciencebase-guidance">ScienceBase Guidance<
</a>
</div>
<div class="nav-page nav-page-next">
<a href="../../content/glossary.html" class="pagination-link" aria-label="Glossary">
<span class="nav-page-text">Glossary</span> <i class="bi bi-arrow-right-short"></i>
</a>
</div>
</nav>
</div> <!-- /content -->
Expand Down
165 changes: 15 additions & 150 deletions _site/content/appendix/project_tracking_system/project_tracking_system_considerations.html
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Expand Up @@ -35,12 +35,10 @@
<script src="../../../site_libs/quarto-html/tippy.umd.min.js"></script>
<script src="../../../site_libs/quarto-html/anchor.min.js"></script>
<link href="../../../site_libs/quarto-html/tippy.css" rel="stylesheet">
<link href="../../../site_libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" class="quarto-color-scheme" id="quarto-text-highlighting-styles">
<link href="../../../site_libs/quarto-html/quarto-syntax-highlighting-dark.css" rel="prefetch" class="quarto-color-scheme quarto-color-alternate" id="quarto-text-highlighting-styles">
<link href="../../../site_libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" id="quarto-text-highlighting-styles">
<script src="../../../site_libs/bootstrap/bootstrap.min.js"></script>
<link href="../../../site_libs/bootstrap/bootstrap-icons.css" rel="stylesheet">
<link href="../../../site_libs/bootstrap/bootstrap.min.css" rel="stylesheet" class="quarto-color-scheme" id="quarto-bootstrap" data-mode="light">
<link href="../../../site_libs/bootstrap/bootstrap-dark.min.css" rel="prefetch" class="quarto-color-scheme quarto-color-alternate" id="quarto-bootstrap" data-mode="dark">
<link href="../../../site_libs/bootstrap/bootstrap.min.css" rel="stylesheet" id="quarto-bootstrap" data-mode="light">
<script id="quarto-search-options" type="application/json">{
"location": "sidebar",
"copy-button": false,
Expand All @@ -67,6 +65,17 @@
"search-label": "Search"
}
}</script>
<script type="application/json" class="js-hypothesis-config">
{
"theme": "clean"
}
</script>
<script async="" src="https://hypothes.is/embed.js"></script>
<script>
window.document.addEventListener("DOMContentLoaded", function (_event) {
document.body.classList.add('hypothesis-enabled');
});
</script>


</head>
Expand All @@ -80,7 +89,7 @@
<!-- margin-sidebar -->
<div id="quarto-margin-sidebar" class="sidebar margin-sidebar">

</div>
<div class="quarto-other-links"><h2>Other Links</h2><ul><li><a href="https://forms.office.com/g/xtkDZ3rQjW"><i class="bi bi-pencil-square"></i>Provide User Feedback</a></li></ul></div></div>
<!-- main -->
<main class="content" id="quarto-document-content">

Expand Down Expand Up @@ -129,150 +138,6 @@ <h1 class="title">Project Tracking System (PTS) Considerations</h1>
}
}
toggleBodyColorPrimary();
const disableStylesheet = (stylesheets) => {
for (let i=0; i < stylesheets.length; i++) {
const stylesheet = stylesheets[i];
stylesheet.rel = 'prefetch';
}
}
const enableStylesheet = (stylesheets) => {
for (let i=0; i < stylesheets.length; i++) {
const stylesheet = stylesheets[i];
stylesheet.rel = 'stylesheet';
}
}
const manageTransitions = (selector, allowTransitions) => {
const els = window.document.querySelectorAll(selector);
for (let i=0; i < els.length; i++) {
const el = els[i];
if (allowTransitions) {
el.classList.remove('notransition');
} else {
el.classList.add('notransition');
}
}
}
const toggleGiscusIfUsed = (isAlternate, darkModeDefault) => {
const baseTheme = document.querySelector('#giscus-base-theme')?.value ?? 'light';
const alternateTheme = document.querySelector('#giscus-alt-theme')?.value ?? 'dark';
let newTheme = '';
if(darkModeDefault) {
newTheme = isAlternate ? baseTheme : alternateTheme;
} else {
newTheme = isAlternate ? alternateTheme : baseTheme;
}
const changeGiscusTheme = () => {
// From: https://github.com/giscus/giscus/issues/336
const sendMessage = (message) => {
const iframe = document.querySelector('iframe.giscus-frame');
if (!iframe) return;
iframe.contentWindow.postMessage({ giscus: message }, 'https://giscus.app');
}
sendMessage({
setConfig: {
theme: newTheme
}
});
}
const isGiscussLoaded = window.document.querySelector('iframe.giscus-frame') !== null;
if (isGiscussLoaded) {
changeGiscusTheme();
}
}
const toggleColorMode = (alternate) => {
// Switch the stylesheets
const alternateStylesheets = window.document.querySelectorAll('link.quarto-color-scheme.quarto-color-alternate');
manageTransitions('#quarto-margin-sidebar .nav-link', false);
if (alternate) {
enableStylesheet(alternateStylesheets);
for (const sheetNode of alternateStylesheets) {
if (sheetNode.id === "quarto-bootstrap") {
toggleBodyColorMode(sheetNode);
}
}
} else {
disableStylesheet(alternateStylesheets);
toggleBodyColorPrimary();
}
manageTransitions('#quarto-margin-sidebar .nav-link', true);
// Switch the toggles
const toggles = window.document.querySelectorAll('.quarto-color-scheme-toggle');
for (let i=0; i < toggles.length; i++) {
const toggle = toggles[i];
if (toggle) {
if (alternate) {
toggle.classList.add("alternate");
} else {
toggle.classList.remove("alternate");
}
}
}
// Hack to workaround the fact that safari doesn't
// properly recolor the scrollbar when toggling (#1455)
if (navigator.userAgent.indexOf('Safari') > 0 && navigator.userAgent.indexOf('Chrome') == -1) {
manageTransitions("body", false);
window.scrollTo(0, 1);
setTimeout(() => {
window.scrollTo(0, 0);
manageTransitions("body", true);
}, 40);
}
}
const isFileUrl = () => {
return window.location.protocol === 'file:';
}
const hasAlternateSentinel = () => {
let styleSentinel = getColorSchemeSentinel();
if (styleSentinel !== null) {
return styleSentinel === "alternate";
} else {
return false;
}
}
const setStyleSentinel = (alternate) => {
const value = alternate ? "alternate" : "default";
if (!isFileUrl()) {
window.localStorage.setItem("quarto-color-scheme", value);
} else {
localAlternateSentinel = value;
}
}
const getColorSchemeSentinel = () => {
if (!isFileUrl()) {
const storageValue = window.localStorage.getItem("quarto-color-scheme");
return storageValue != null ? storageValue : localAlternateSentinel;
} else {
return localAlternateSentinel;
}
}
const darkModeDefault = false;
let localAlternateSentinel = darkModeDefault ? 'alternate' : 'default';
// Dark / light mode switch
window.quartoToggleColorScheme = () => {
// Read the current dark / light value
let toAlternate = !hasAlternateSentinel();
toggleColorMode(toAlternate);
setStyleSentinel(toAlternate);
toggleGiscusIfUsed(toAlternate, darkModeDefault);
};
// Ensure there is a toggle, if there isn't float one in the top right
if (window.document.querySelector('.quarto-color-scheme-toggle') === null) {
const a = window.document.createElement('a');
a.classList.add('top-right');
a.classList.add('quarto-color-scheme-toggle');
a.href = "";
a.onclick = function() { try { window.quartoToggleColorScheme(); } catch {} return false; };
const i = window.document.createElement("i");
i.classList.add('bi');
a.appendChild(i);
window.document.body.appendChild(a);
}
// Switch to dark mode if need be
if (hasAlternateSentinel()) {
toggleColorMode(true);
} else {
toggleColorMode(false);
}
const icon = "";
const anchorJS = new window.AnchorJS();
anchorJS.options = {
Expand Down Expand Up @@ -334,7 +199,7 @@ <h1 class="title">Project Tracking System (PTS) Considerations</h1>
});
var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
var mailtoRegex = new RegExp(/^mailto:/);
var filterRegex = new RegExp("https:\/\/studious-adventure-wo15nv1\.pages\.github\.io");
var filterRegex = new RegExp("https:\/\/usfws\.github\.io\/Science_Applications_Metadata_Guidance\/");
var isInternal = (href) => {
return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
}
Expand Down
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