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@WayScience

The Way Lab

The Way Lab at CU Anschutz

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  1. phenotypic_profiling phenotypic_profiling Public

    Machine learning for predicting 15 single-cell phenotypes from cell morphology profiles

    Jupyter Notebook 2 3

  2. nf1_schwann_cell_painting_data nf1_schwann_cell_painting_data Public

    This repository contains all the modules to perform image-based analysis with CellProfiler on NF1 Schwann cell data.

    Jupyter Notebook 5 6

  3. pyroptosis_signature_image_profiling pyroptosis_signature_image_profiling Public

    This repository contains the pipelines used to analyze the data sets from the Interstellar collaboration.

    Jupyter Notebook 2 3

  4. coSMicQC coSMicQC Public

    Single cell Morphology Quality Control (coSMicQC)

    Python 7 3

  5. predicting-cell-injury-compounds predicting-cell-injury-compounds Public

    Processing cell-injury profiles using Pycytominer to generate selected features profiles for training a multi-class regression model to identify cellular injury.

    Jupyter Notebook 2

Repositories

Showing 10 of 73 repositories
  • targeted_fibrosis_drug_screen Public

    Image analysis and image-based profiling of a fibrosis drug screen to identify compound hits using a machine learning model.

    WayScience/targeted_fibrosis_drug_screen’s past year of commit activity
    Jupyter Notebook 2 CC0-1.0 2 1 0 Updated Dec 19, 2024
  • CFReT-screen-mAP-analysis Public

    Analysis notebooks applying mean average Precision (mAP) to the CFReT screen image-based profiles dataset.

    WayScience/CFReT-screen-mAP-analysis’s past year of commit activity
    Jupyter Notebook 0 1 3 1 Updated Dec 18, 2024
  • coSMicQC Public

    Single cell Morphology Quality Control (coSMicQC)

    WayScience/coSMicQC’s past year of commit activity
    Python 7 BSD-3-Clause 3 16 0 Updated Dec 17, 2024
  • gene_dependency_representations Public
    WayScience/gene_dependency_representations’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 5 0 0 Updated Dec 16, 2024
  • CytoDataFrame Public

    An in-memory data analysis format for single-cell profiles alongside their corresponding images and segmentation masks.

    WayScience/CytoDataFrame’s past year of commit activity
    Python 0 BSD-3-Clause 1 10 0 Updated Dec 16, 2024
  • nuclear_speckles_analysis Public
    WayScience/nuclear_speckles_analysis’s past year of commit activity
    Jupyter Notebook 0 CC0-1.0 1 1 1 Updated Dec 14, 2024
  • pairwise_compare Public
    WayScience/pairwise_compare’s past year of commit activity
    Python 1 CC-BY-4.0 0 2 1 Updated Dec 13, 2024
  • pediatric_cancer_atlas_profiling Public

    Image analysis and image-based profiling of pediatic cancer cell lines to extract morphological profiles.

    WayScience/pediatric_cancer_atlas_profiling’s past year of commit activity
    Jupyter Notebook 0 CC0-1.0 2 1 1 Updated Dec 11, 2024
  • Phenotypic_severity_and_variance Public

    Quantifying Zebrafish opercle bone morphology

    WayScience/Phenotypic_severity_and_variance’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 1 1 0 Updated Dec 6, 2024
  • GFF_3D_organoid_profiling_pipeline Public
    WayScience/GFF_3D_organoid_profiling_pipeline’s past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 2 0 2 Updated Dec 4, 2024
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