August 19th release that is actually out on August 21st

New release for August 2019. Take note now sqlalchemy, barrnap and altair are not dependencies. All can be installed via conda.

After this release a new structure for branches is being used. Master branch will be the release + any bugfixes associated with getting the release to work. This branch should be stable. The dev branch holds all features added since the last release. This branch is semi-stable. This branch will be rolled into master at each new release. Individual features will be developed on their own branches. These are not at all stable. Once they are tested and working they can be rolled into dev.

Changelog:

• Add gene start, end and strandedness to annotations
• Add GTDBk taxonomy and checkM contamination and completeness to annotations
• Add --skip_trnascan flag
• Work around is to set $TMPDIR variable
• Add ability to use custom fasta as annotation databases (BLAST style search only (at this point))
• All fasta headers now stored in sqlite db
• Output genbank file per bin with annotation information
• Add rRNA detection using barrnap
• Creation of genome_stats.tsv
• Creation of funcation_heatmap.html
• Bugfixes surrounding processing of small genomes with few annotations
• Various bugfixes