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Release v1.2.4 8/3/2021

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@shafferm shafferm released this 04 Aug 20:34
· 267 commits to master since this release

Potentially breaking change in this release for those parsing annotation.tsv results.
VOGDB hits columns have been renamed from vogdb_description and vogdb_categories to
vogdb_id (previously unreported), vodb_categories and vogdb_hit
(equivalent to vogdb_description).

Changelog

  • Add anammox to distillate
  • Fix more no hits bugs (thanks to @cerebis)
  • VOGDB output columns renamed to match other databases
  • Big upgrade to merge annotations, now includes all parts of DRAM annotate output
  • Added option to run KOfam with dbCAN thresholds (used in other DRAM hmmscan applications) instead of KOfam recommended thresholds
  • @rmFlynn fixed bug where VirSorter 2 headers were not recognized by DRAM-v
  • @rmFlynn upgraded warnings and error messages for DRAM-v around parsing affi contigs and fasta files
  • Fixed bug were non-cazy ID's were pulled out of dbCAN descriptions