Fix actions

.github/ISSUE_TEMPLATE/bug_report.md

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+---
+name: Bug report
+about: Create a report to help us improve
+title: ''
+labels: ''
+assignees: ''
+
+---
+
+**Describe the bug**
+A clear and concise description of what the bug is.
+
+**To Reproduce**
+Steps to reproduce the behavior:
+1. Go to '...'
+2. Click on '....'
+3. Scroll down to '....'
+4. See error
+
+**Expected behavior**
+A clear and concise description of what you expected to happen.
+
+**Screenshots**
+If applicable, add screenshots to help explain your problem.
+
+**Desktop (please complete the following information):**
+ - OS: [e.g. iOS]
+ - Browser [e.g. chrome, safari]
+ - Version [e.g. 22]
+
+**Smartphone (please complete the following information):**
+ - Device: [e.g. iPhone6]
+ - OS: [e.g. iOS8.1]
+ - Browser [e.g. stock browser, safari]
+ - Version [e.g. 22]
+
+**Additional context**
+Add any other context about the problem here.

.github/ISSUE_TEMPLATE/feature_request.md

@@ -0,0 +1,20 @@
+---
+name: Feature request
+about: Suggest an idea for this project
+title: ''
+labels: ''
+assignees: ''
+
+---
+
+**Is your feature request related to a problem? Please describe.**
+A clear and concise description of what the problem is. Ex. I'm always frustrated when [...]
+
+**Describe the solution you'd like**
+A clear and concise description of what you want to happen.
+
+**Describe alternatives you've considered**
+A clear and concise description of any alternative solutions or features you've considered.
+
+**Additional context**
+Add any other context or screenshots about the feature request here.

.github/PULL_REQUEST_TEMPLATE.md

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+# STOP - Read this First!
+Reporting a security vulnerability?  
+Check out the project's [security policy](https://github.com/zeiss/pylibczirw/security/policy).
+
+# Fill out and Adjust this Template
+
+## Description
+
+Summary of the change(s) and which issue(s) is/are fixed  
+Relevant motivation and context  
+Dependencies required for this change  
+
+Fixes # (issue)
+
+### Type of change
+
+- [ ] Bug fix (non-breaking change which fixes an issue)
+- [ ] New feature (non-breaking change which adds functionality)
+- [ ] Breaking change (fix or feature that would cause existing functionality to not work as expected)
+- [ ] This change requires a documentation update
+
+## How Has This Been Tested?
+
+Describe the tests that you ran to verify your changes.  
+Provide instructions to reproduce.
+
+## Checklist:
+
+- [ ] I followed the [Contributing Guidelines](https://github.com/ZEISS/pylibczirw/blob/main/CONTRIBUTING.md).
+- [ ] Based on [Commit Parsing](https://python-semantic-release.readthedocs.io/en/latest/commit-parsing.html): In case a new major release will be created (because the body or footer begins with 'BREAKING CHANGE:'), I created a new [Jupyter notebook with a matching version](https://github.com/ZEISS/pylibczirw/tree/main/doc/jupyter_notebooks).
+- [ ] Based on [Commit Parsing](https://python-semantic-release.readthedocs.io/en/latest/commit-parsing.html): In case a new minor/patch release will be created (because commit begins with 'feat'/('fix' or 'perf')), I optionally created a new [Jupyter notebook with a matching version](https://github.com/ZEISS/pylibczirw/tree/main/doc/jupyter_notebooks).
+- [ ] I did a self-review.
+- [ ] I commented my code, particularly in hard-to-understand areas.
+- [ ] In case of API changes, I updated [API.md](https://github.com/ZEISS/pylibczirw/blob/main/API.md).
+- [ ] I have added tests that prove my fix is effective or that my feature works.
+- [ ] New and existing unit tests pass locally with my changes.

.github/actions/steps_download/action.yml

@@ -28,6 +28,6 @@ runs:
       TMP: "${{ runner.temp }}"
       TESTRESULTSPATH: "${{ runner.temp }}"
       COVRESULTSPATH: "${{ runner.temp }}\\cov.xml"
-    run: tox --installpkg ${{ runner.workspace }}/${{inputs.ArtifactName}}/* -vv -r -s true
+    run: tox --installpkg ${{ github.workspace }}/${{inputs.ArtifactName}}/* -vv -r -s true
     shell: bash
     working-directory: "${{inputs.PkgRootFolder}}"

.github/codecov.yml

@@ -0,0 +1,39 @@
+# Based on https://docs.codecov.com/docs/common-recipe-list#set-non-blocking-status-checks
+coverage:
+  status:
+    project:
+      default:
+        informational: true
+    patch:
+      default:
+        informational: true
+# Based on https://docs.codecov.com/docs/flags#recommended-automatic-flag-management
+flag_management:
+  default_rules:
+    statuses:
+      - type: project
+        informational: true
+      - type: patch
+        informational: true
+# Based on https://docs.codecov.com/docs/components
+# Based on https://github.com/codecov/example-components
+# Based on https://about.codecov.io/blog/codecov-components-breaking-down-coverage-by-filters/
+# Based on https://about.codecov.io/blog/granular-test-coverage-analysis-using-components-in-codecov/
+component_management:
+  default_rules:
+    statuses:
+      - type: project
+        informational: true
+      - type: patch
+        informational: true
+  individual_components:
+    - component_id: "id_pylibczirw_python"
+      name: pylibczirw_python
+      paths:
+        - "pylibCZIrw/"
+    - component_id: "id_pylibczirw_c"
+      name: pylibczirw_c
+      paths:
+        - "_pylibCZIrw/"
+comment:
+  layout: "header, diff, flags, components"  # show component info in the PR comment

.github/workflows/cla.yml

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+name: CLA
+
+on:
+  pull_request:
+    branches:
+      - main
+    types:
+      - opened
+      - reopened
+      - synchronize
+      - labeled
+      - unlabeled
+
+permissions:
+  contents: read
+
+jobs:
+  # Based on https://stackoverflow.com/questions/71502652/prevent-merging-of-branch-conditionally-based-on-label
+  fail-for-no-cla:
+    if: ${{!contains(github.event.pull_request.labels.*.name, 'cla')}}
+    runs-on: ubuntu-latest
+    steps:
+      - name: Fail for missing cla label
+        run: |
+          echo "cla label missing. See CONTRIBUTING.md."
+          exit 1

.github/workflows/pages.yml

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+# Simple workflow for deploying static content to GitHub Pages
+name: Pages
+
+on:
+  # Runs on pushes targeting the default branch
+  push:
+    branches: ["main"]
+
+# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
+permissions:
+  contents: read
+  pages: write
+  id-token: write
+
+# Allow one concurrent deployment
+concurrency:
+  group: "pages"
+  cancel-in-progress: true
+
+env:
+  DOCPATH: pylibCZIrw-documentation.html
+
+jobs:
+  # Single deploy job since we're just deploying
+  deploy:
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v3
+      # From https://github.com/pandoc/pandoc-action-example
+      - uses: docker://pandoc/core:2.12
+        with:
+          args: >-  # allows you to break string into multiple lines
+            --self-contained
+            --output=${{ env.DOCPATH }}
+            API.md
+      - name: Setup Pages
+        uses: actions/configure-pages@v2
+      - name: Upload artifact
+        uses: actions/upload-pages-artifact@v1
+        with:
+          # Upload entire repository
+          path: "${{github.workspace}}/${{ env.DOCPATH }}"
+      - name: Deploy to GitHub Pages
+        id: deployment
+        uses: actions/deploy-pages@v1

.github/workflows/reuse.yml

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+name: REUSE
+
+on:
+  push:
+    branches: ["main"]
+  pull_request:
+    branches: ["main"]
+
+permissions:
+  contents: read
+
+jobs:
+  REUSE:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - name: REUSE Compliance Check
+        uses: fsfe/reuse-action@v1

.reuse/dep5

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+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: pylibCZIrw
+Upstream-Contact: Carl Zeiss Microscopy GmbH <github.microscopy@zeiss.com>
+Source: https://github.com/ZEISS/pylibczirw
+
+Files: .github/*
+Copyright: 2024 Carl Zeiss Microscopy GmbH
+License: CC0-1.0
+
+Files: hooks/*
+Copyright: 2024 Carl Zeiss Microscopy GmbH
+License: CC0-1.0
+
+Files: templates/*
+Copyright: 2024 Carl Zeiss Microscopy GmbH
+License: CC0-1.0
+
+Files: _pylibCZIrw/*
+Copyright: 2017-2022 Carl Zeiss Microscopy GmbH
+License: LGPL-3.0-or-later
+
+Files: doc/*
+Copyright: 2017-2022 Carl Zeiss Microscopy GmbH
+License: LGPL-3.0-or-later
+
+Files: pylibCZIrw/*
+Copyright: 2017-2022 Carl Zeiss Microscopy GmbH
+License: LGPL-3.0-or-later
+
+Files: test_data/*
+Copyright: 2017-2022 Carl Zeiss Microscopy GmbH
+License: LGPL-3.0-or-later
+
+Files: cla_*.txt CODE_OF_CONDUCT.md CONTRIBUTING.md README.md SECURITY.md API.md CHANGELOG.md INFO.md TROUBLESHOOTING.md CMake* MANIFEST.in NOTICE.txt python-semantic-release.json .gitignore .gitattributes .gitmodules [Doc]* bandit.yaml requirements_*.txt setup.cfg setup.py tox.ini tox_cibuildwheel.ini
+Copyright: 2017-2022 Carl Zeiss Microscopy GmbH
+License: LGPL-3.0-or-later