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1. scCATCH scCATCH Public

   Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

   R 218 38

2. scDeepSort scDeepSort Public

   Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network

   Python 99 18

3. bulk2space bulk2space Public

   a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell expression profiles

   Jupyter Notebook 114 23

4. SpaTalk SpaTalk Public

   Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data

   R 62 18

5. scSpace scSpace Public

   an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial transcriptome references

   HTML 21 3

6. scCube scCube Public

   an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT data

   Jupyter Notebook 17 1