Selected code from a pipeline I wrote for analyzing NGS data from screens using pooled CRISPR guides. The parts I have included here are the master Snakefile, the Python wrapper script that wrangles the Snakefile's arguments and starts the pipeline, and an R script I created for generating input files for one of the steps of the pipeline.
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Selected code from a pipeline I wrote for analyzing NGS data from screens using pooled CRISPR guides. The parts I have included here are the master Snakefile, the Python wrapper script that wrangles the Snakefile's arguments and starts the pipeline, and an R script I created for generating input files for one of the steps of the pipeline.
abartlett004/CRISPR_Screen_Pipelining
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Selected code from a pipeline I wrote for analyzing NGS data from screens using pooled CRISPR guides. The parts I have included here are the master Snakefile, the Python wrapper script that wrangles the Snakefile's arguments and starts the pipeline, and an R script I created for generating input files for one of the steps of the pipeline.
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