Attempt fixing detection of PyInterpreterState_GetID
#650
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Test | |
| on: | |
| - push | |
| - pull_request | |
| jobs: | |
| test_linux_x86: | |
| name: Test (Linux) | |
| runs-on: ubuntu-latest | |
| env: | |
| OS: Linux | |
| strategy: | |
| matrix: | |
| include: | |
| - python-version: 3.7 | |
| python-release: v3.7 | |
| python-impl: CPython | |
| - python-version: 3.8 | |
| python-release: v3.8 | |
| python-impl: CPython | |
| - python-version: 3.9 | |
| python-release: v3.9 | |
| python-impl: CPython | |
| - python-version: '3.10' | |
| python-release: 'v3.10' | |
| python-impl: CPython | |
| - python-version: '3.11' | |
| python-release: 'v3.11' | |
| python-impl: CPython | |
| - python-version: '3.12' | |
| python-release: 'v3.12' | |
| python-impl: CPython | |
| - python-version: pypy-3.7 | |
| python-release: v3.7 | |
| python-impl: PyPy | |
| - python-version: pypy-3.8 | |
| python-release: v3.8 | |
| python-impl: PyPy | |
| - python-version: pypy-3.9 | |
| python-release: v3.9 | |
| python-impl: PyPy | |
| - python-version: pypy-3.10 | |
| python-release: v3.10 | |
| python-impl: PyPy | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: true | |
| - name: Setup Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Show Python build environment | |
| run: python -m sysconfig | |
| - name: Update pip | |
| run: python -m pip install -U pip wheel setuptools | |
| - name: Install Python requirements | |
| run: python -m pip install -r .github/workflows/requirements.txt | |
| - name: Build C extension | |
| run: pip install -vv -e . --no-build-isolation | |
| - name: Install test requirements | |
| run: python -m pip install -r src/pyhmmer/tests/requirements.txt | |
| - name: Test with coverage | |
| run: python -m coverage run -m unittest pyhmmer.tests -vv | |
| - name: Upload to Codecov | |
| if: matrix.python-impl == 'CPython' | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| flags: ${{ matrix.python-release }} | |
| env_vars: OS | |
| name: test-python-${{ matrix.python-version }} | |
| fail_ci_if_error: false | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| verbose: true | |
| # test_linux_arm64: | |
| # name: Test (Linux, arm64) | |
| # runs-on: ubuntu-latest | |
| # strategy: | |
| # matrix: | |
| # python-tag: | |
| # - cp310-manylinux_aarch64 | |
| # - cp311-manylinux_aarch64 | |
| # steps: | |
| # - uses: actions/checkout@v4 | |
| # with: | |
| # submodules: true | |
| # - name: Set up QEMU | |
| # id: qemu | |
| # uses: docker/setup-qemu-action@v3 | |
| # with: | |
| # platforms: arm64 | |
| # - name: Build manylinux wheels | |
| # uses: pypa/cibuildwheel@v2.16.5 | |
| # env: | |
| # CIBW_ARCHS: aarch64 | |
| # CIBW_BUILD: ${{ matrix.python-tag }} | |
| # CIBW_BUILD_VERBOSITY: 2 | |
| # CIBW_BEFORE_BUILD: pip install cython | |
| # CIBW_TEST_COMMAND: python -m unittest pyhmmer.tests -vv | |
| # CIBW_TEST_REQUIRES: importlib-resources | |
| # with: | |
| # output-dir: dist | |
| # - uses: actions/upload-artifact@v3 | |
| # with: | |
| # name: wheels | |
| # path: dist/* | |
| test_osx_x86: | |
| name: Test (OSX) | |
| runs-on: macos-12 | |
| env: | |
| OS: OSX | |
| _PYTHON_HOST_PLATFORM: macosx-10.9-x86_64 | |
| strategy: | |
| matrix: | |
| include: | |
| - python-version: 3.7 | |
| python-release: v3.7 | |
| python-impl: CPython | |
| - python-version: 3.8 | |
| python-release: v3.8 | |
| python-impl: CPython | |
| - python-version: 3.9 | |
| python-release: v3.9 | |
| python-impl: CPython | |
| - python-version: '3.10' | |
| python-release: 'v3.10' | |
| python-impl: CPython | |
| - python-version: '3.11' | |
| python-release: 'v3.11' | |
| python-impl: CPython | |
| - python-version: '3.12' | |
| python-release: 'v3.12' | |
| python-impl: CPython | |
| - python-version: pypy-3.7 | |
| python-release: v3.7 | |
| python-impl: PyPy | |
| - python-version: pypy-3.8 | |
| python-release: v3.8 | |
| python-impl: PyPy | |
| - python-version: pypy-3.9 | |
| python-release: v3.9 | |
| python-impl: PyPy | |
| - python-version: pypy-3.10 | |
| python-release: v3.10 | |
| python-impl: PyPy | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: true | |
| - name: Setup Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Show Python build environment | |
| run: arch -x86_64 python -m sysconfig | |
| - name: Update pip | |
| run: python -m pip install -U pip wheel setuptools | |
| - name: Install Python requirements | |
| run: python -m pip install -r .github/workflows/requirements.txt | |
| - name: Build C extension | |
| run: arch -x86_64 pip install -vv -e . --no-build-isolation | |
| - name: Install test requirements | |
| run: python -m pip install -r src/pyhmmer/tests/requirements.txt | |
| if: matrix.python-impl == 'CPython' | |
| - name: Test with coverage | |
| run: python -m coverage run -m unittest pyhmmer.tests -vv | |
| - name: Upload to Codecov | |
| uses: codecov/codecov-action@v4 | |
| if: matrix.python-impl == 'CPython' | |
| with: | |
| flags: ${{ matrix.python-release }} | |
| env_vars: OS | |
| name: test-python-${{ matrix.python-version }} | |
| fail_ci_if_error: false | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| codecov_curl_args: "--globoff" | |
| verbose: true | |