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Update cibuildwheel configuration in package.yml Actions workflow
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althonos committed Oct 25, 2024
1 parent 7f5ca71 commit 4eaaa50
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Showing 2 changed files with 10 additions and 63 deletions.
70 changes: 8 additions & 62 deletions .github/workflows/package.yml
Original file line number Diff line number Diff line change
Expand Up @@ -10,20 +10,6 @@ jobs:
wheel-linux-aarch64:
name: Build Linux wheels (Aarch64)
runs-on: ubuntu-20.04
strategy:
matrix:
python-tag:
- cp36-manylinux_aarch64
- cp37-manylinux_aarch64
- cp38-manylinux_aarch64
- cp39-manylinux_aarch64
- cp310-manylinux_aarch64
- cp311-manylinux_aarch64
- cp312-manylinux_aarch64
# - pp37-manylinux_aarch64
# - pp38-manylinux_aarch64
# - pp39-manylinux_aarch64
# - pp310-manylinux_aarch64
steps:
- uses: actions/checkout@v3
with:
Expand All @@ -37,35 +23,20 @@ jobs:
uses: pypa/cibuildwheel@v2.16.5
env:
CIBW_ARCHS: aarch64
CIBW_BUILD: ${{ matrix.python-tag }}
CIBW_BUILD: 'cp*-manylinux_aarch64'
CIBW_BEFORE_BUILD: pip install cython
CIBW_BUILD_VERBOSITY: 2
CIBW_TEST_COMMAND: python -m unittest pyhmmer.tests -vv
CIBW_TEST_REQUIRES: importlib-resources
with:
output-dir: dist
- uses: actions/upload-artifact@v4
with:
name: wheels-${{ matrix.python-tag }}
name: wheels-manylinux_aarch64
path: dist/*

wheel-linux-x86_64:
name: Build Linux wheels (x86-64)
runs-on: ubuntu-20.04
strategy:
matrix:
python-tag:
- cp36-manylinux_x86_64
- cp37-manylinux_x86_64
- cp38-manylinux_x86_64
- cp39-manylinux_x86_64
- cp310-manylinux_x86_64
- cp311-manylinux_x86_64
- cp312-manylinux_x86_64
# - pp37-manylinux_x86_64
# - pp38-manylinux_x86_64
# - pp39-manylinux_x86_64
# - pp310-manylinux_x86_64
steps:
- uses: actions/checkout@v4
with:
Expand All @@ -74,35 +45,20 @@ jobs:
uses: pypa/cibuildwheel@v2.16.5
env:
CIBW_ARCHS: x86_64
CIBW_BUILD: ${{ matrix.python-tag }}
CIBW_BUILD: 'cp*-manylinux_x86_64'
CIBW_BEFORE_BUILD: pip install cython
CIBW_BUILD_VERBOSITY: 2
CIBW_TEST_COMMAND: python -m unittest pyhmmer.tests -vv
CIBW_TEST_REQUIRES: importlib-resources
with:
output-dir: dist
- uses: actions/upload-artifact@v4
with:
name: wheels-${{ matrix.python-tag }}
name: wheels-manylinux_x86_64
path: dist/*

wheel-macos-x86_64:
name: Build MacOS wheels (x86-64)
runs-on: macOS-12
strategy:
matrix:
python-tag:
- cp36-macosx_x86_64
- cp37-macosx_x86_64
- cp38-macosx_x86_64
- cp39-macosx_x86_64
- cp310-macosx_x86_64
- cp311-macosx_x86_64
- cp312-macosx_x86_64
# - pp37-macosx_x86_64
# - pp38-macosx_x86_64
# - pp39-macosx_x86_64
# - pp310-macosx_x86_64
steps:
- uses: actions/checkout@v4
with:
Expand All @@ -111,29 +67,20 @@ jobs:
uses: pypa/cibuildwheel@v2.16.5
env:
CIBW_ARCHS: x86_64
CIBW_BUILD: ${{ matrix.python-tag }}
CIBW_BUILD: 'cp*-macosx_x86_64'
CIBW_BEFORE_BUILD: pip install cython
CIBW_BUILD_VERBOSITY: 2
CIBW_TEST_COMMAND: python -m unittest pyhmmer.tests -vv
CIBW_TEST_REQUIRES: importlib-resources
with:
output-dir: dist
- uses: actions/upload-artifact@v4
with:
name: wheels-${{ matrix.python-tag }}
name: wheels-macosx_x86_64
path: dist/*

wheel-macos-aarch64:
name: Build MacOS wheels (Aarch64)
runs-on: macOS-12
strategy:
matrix:
python-tag:
- cp38-macosx_arm64
- cp39-macosx_arm64
- cp310-macosx_arm64
- cp311-macosx_arm64
- cp312-macosx_arm64
steps:
- uses: actions/checkout@v4
with:
Expand All @@ -142,16 +89,15 @@ jobs:
uses: pypa/cibuildwheel@v2.16.5
env:
CIBW_ARCHS: arm64
CIBW_BUILD: ${{ matrix.python-tag }}
CIBW_BUILD: 'cp*-macosx_arm64'
CIBW_BEFORE_BUILD: pip install cython
CIBW_BUILD_VERBOSITY: 2
CIBW_TEST_COMMAND: python -m unittest pyhmmer.tests -vv
CIBW_TEST_REQUIRES: importlib-resources
with:
output-dir: dist
- uses: actions/upload-artifact@v4
with:
name: wheels-${{ matrix.python-tag }}
name: wheels-macosx_arm64
path: dist/*

sdist:
Expand Down
3 changes: 2 additions & 1 deletion pyproject.toml
Original file line number Diff line number Diff line change
Expand Up @@ -79,8 +79,9 @@ cmake.define.CMAKE_LINKER_TYPE = "mold"
[tool.cibuildwheel]
before-build = "pip install scikit-build-core cython"
build-frontend = { name = "pip", args = ["--no-build-isolation"] }
test-command = "python -m unittest pyhmmer.tests -v"
build-verbosity = 1
test-command = "python -m unittest pyhmmer.tests -v"
test-requires = "importlib-resources"

[tool.coverage.report]
include = ["src/pyhmmer/*"]
Expand Down

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