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@andersen-lab

Andersen Laboratory @ Scripps Research

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  1. HCoV-19-Genomics HCoV-19-Genomics Public

    SARS-CoV-2 genomics

    15 5

  2. west-nile-genomics-wnv4k west-nile-genomics-wnv4k Public

    West Nile virus genomic data produced as part of the WestNile 4K Project

    1 3

  3. ivar ivar Public

    Forked from gkarthik/ivar

    iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

    C++ 119 41

  4. Freyja Freyja Public

    Depth-weighted De-Mixing

    HTML 106 30

  5. avian-influenza avian-influenza Public

    Consensus sequences for U.S. H5N1 clade 2.3.4.4b

    Shell 28 6

Repositories

Showing 10 of 55 repositories
  • Freyja Public

    Depth-weighted De-Mixing

    andersen-lab/Freyja’s past year of commit activity
    HTML 106 BSD-2-Clause 30 7 1 Updated Dec 20, 2024
  • Freyja-data Public

    Previous versions of Freyja barcodes and metadata files

    andersen-lab/Freyja-data’s past year of commit activity
    Python 4 0 0 0 Updated Dec 20, 2024
  • freyja-cryptic Public
    andersen-lab/freyja-cryptic’s past year of commit activity
    Python 0 0 0 0 Updated Dec 19, 2024
  • Freyja-barcodes Public
    andersen-lab/Freyja-barcodes’s past year of commit activity
    HTML 5 BSD-2-Clause 0 1 1 Updated Dec 18, 2024
  • ivar Public Forked from gkarthik/ivar

    iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

    andersen-lab/ivar’s past year of commit activity
    C++ 119 GPL-3.0 43 43 9 Updated Dec 17, 2024
  • SARS-CoV-2_WasteWater_San-Diego Public
    andersen-lab/SARS-CoV-2_WasteWater_San-Diego’s past year of commit activity
    Python 12 3 0 0 Updated Dec 17, 2024
  • Freyja-nf Public Forked from andersen-lab/Freyja-SRA

    nextflow pipeline for NICD wastewater surveillance

    andersen-lab/Freyja-nf’s past year of commit activity
    Python 0 GPL-3.0 2 0 0 Updated Dec 15, 2024
  • Freyja-SRA Public
    andersen-lab/Freyja-SRA’s past year of commit activity
    Python 3 GPL-3.0 2 0 0 Updated Dec 15, 2024
  • avian-influenza Public

    Consensus sequences for U.S. H5N1 clade 2.3.4.4b

    andersen-lab/avian-influenza’s past year of commit activity
    Shell 28 6 2 1 Updated Dec 7, 2024
  • Mpox_West_Africa Public
    andersen-lab/Mpox_West_Africa’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Nov 13, 2024
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