Sarah Segel: Merge pull request #92 from automl/development

automl · Nov 8, 2023 · da79c45 · da79c45
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diff --git a/main/_downloads/40821b6c90aa18945a4ed76124057823/minimal.ipynb b/main/_downloads/40821b6c90aa18945a4ed76124057823/minimal.ipynb
@@ -35,7 +35,7 @@
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diff --git a/main/_downloads/bc82bea3a5dd7bdba60b65220891d9e5/examples_python.zip b/main/_downloads/bc82bea3a5dd7bdba60b65220891d9e5/examples_python.zip
diff --git a/main/_downloads/bdc2709d62468d73e63248ef71ebc760/mnist_pytorch.ipynb b/main/_downloads/bdc2709d62468d73e63248ef71ebc760/mnist_pytorch.ipynb
@@ -35,7 +35,7 @@
       "name": "python",
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       "pygments_lexer": "ipython3",
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diff --git a/main/_downloads/e9c545ae14a903164c9a627d1b3a375a/parallel_coordinates.ipynb b/main/_downloads/e9c545ae14a903164c9a627d1b3a375a/parallel_coordinates.ipynb
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diff --git a/main/_downloads/f17079aa123e756d5eb37459dfeb46a2/digits_sklearn.ipynb b/main/_downloads/f17079aa123e756d5eb37459dfeb46a2/digits_sklearn.ipynb
@@ -35,7 +35,7 @@
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diff --git a/main/_downloads/fb625db3c50d423b1b7881136ffdeec8/examples_jupyter.zip b/main/_downloads/fb625db3c50d423b1b7881136ffdeec8/examples_jupyter.zip
diff --git a/main/_modules/deepcave/evaluators/epm/fanova_forest.html b/main/_modules/deepcave/evaluators/epm/fanova_forest.html
@@ -1,10 +1,10 @@
 <!DOCTYPE html>
 
-<html lang="en">
+<html lang="en" data-content_root="../../../../">
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>deepcave.evaluators.epm.fanova_forest &#8212; DeepCAVE Documentation 1.1.2 documentation</title>
+    <title>deepcave.evaluators.epm.fanova_forest &#8212; DeepCAVE Documentation 1.1.3 documentation</title>
 
   <link href="../../../../_static/css/theme.css" rel="stylesheet">
   <link href="../../../../_static/css/index.ac9c05f7c49ca1e1f876c6e36360ea26.css" rel="stylesheet">
@@ -21,18 +21,18 @@
 
 
 
-    <link rel="stylesheet" type="text/css" href="../../../../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../../../../_static/css/custom.css" />
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-    <link rel="stylesheet" type="text/css" href="../../../../_static/sg_gallery-dataframe.css" />
-    <link rel="stylesheet" type="text/css" href="../../../../_static/sg_gallery-rendered-html.css" />
+    <link rel="stylesheet" type="text/css" href="../../../../_static/pygments.css?v=a746c00c" />
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+    <link rel="stylesheet" type="text/css" href="../../../../_static/sg_gallery-binder.css?v=f4aeca0c" />
+    <link rel="stylesheet" type="text/css" href="../../../../_static/sg_gallery-dataframe.css?v=2082cf3c" />
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-    <script src="../../../../_static/doctools.js"></script>
-    <script src="../../../../_static/sphinx_highlight.js"></script>
+    <script src="../../../../_static/documentation_options.js?v=0ac1cb89"></script>
+    <script src="../../../../_static/doctools.js?v=888ff710"></script>
+    <script src="../../../../_static/sphinx_highlight.js?v=dc90522c"></script>
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@@ -92,11 +92,11 @@
         <div class="dropdown mt-1">
     <button type="button" class="btn btn-secondary btn-md navbar-btn dropdown-toggle" id="dLabelMore"
         data-toggle="dropdown">
-        v1.1.2
+        v1.1.3
         <span class="caret"></span>
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     <div class="dropdown-menu list-group-flush py-0" aria-labelledby="dLabelMore">
-        <a class="list-group-item list-group-item-action" href="#">v1.1.2</a>
+        <a class="list-group-item list-group-item-action" href="#">v1.1.3</a>
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 </div>
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@@ -121,7 +121,7 @@
 
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-<div class="mb-3">v1.1.2</div><nav class="bd-links" id="bd-docs-nav" aria-label="Main navigation">
+<div class="mb-3">v1.1.3</div><nav class="bd-links" id="bd-docs-nav" aria-label="Main navigation">
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@@ -690,7 +690,9 @@ <h1>Source code for deepcave.evaluators.epm.fanova_forest</h1><div class="highli
 <span class="kn">from</span> <span class="nn">deepcave.evaluators.epm.random_forest</span> <span class="kn">import</span> <span class="n">RandomForest</span>
 
 
-<div class="viewcode-block" id="FanovaForest"><a class="viewcode-back" href="../../../../api/deepcave.evaluators.epm.fanova_forest.html#deepcave.evaluators.epm.fanova_forest.FanovaForest">[docs]</a><span class="k">class</span> <span class="nc">FanovaForest</span><span class="p">(</span><span class="n">RandomForest</span><span class="p">):</span>
+<div class="viewcode-block" id="FanovaForest">
+<a class="viewcode-back" href="../../../../api/deepcave.evaluators.epm.fanova_forest.html#deepcave.evaluators.epm.fanova_forest.FanovaForest">[docs]</a>
+<span class="k">class</span> <span class="nc">FanovaForest</span><span class="p">(</span><span class="n">RandomForest</span><span class="p">):</span>
 <span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    A fanova forest wrapper for pyrfr.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
@@ -709,7 +711,7 @@ <h1>Source code for deepcave.evaluators.epm.fanova_forest</h1><div class="highli
         <span class="n">instance_features</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
         <span class="n">pca_components</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">int</span><span class="p">]</span> <span class="o">=</span> <span class="mi">2</span><span class="p">,</span>
         <span class="n">cutoffs</span><span class="p">:</span> <span class="n">Tuple</span><span class="p">[</span><span class="nb">float</span><span class="p">,</span> <span class="nb">float</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">inf</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">inf</span><span class="p">),</span>
-        <span class="n">seed</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">int</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
+        <span class="n">seed</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">0</span><span class="p">,</span>
     <span class="p">):</span>
         <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span>
             <span class="n">configspace</span><span class="o">=</span><span class="n">configspace</span><span class="p">,</span>
@@ -802,7 +804,9 @@ <h1>Source code for deepcave.evaluators.epm.fanova_forest</h1><div class="highli
         <span class="c1"># recompute the trees&#39; total variance</span>
         <span class="bp">self</span><span class="o">.</span><span class="n">trees_total_variance</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_model</span><span class="o">.</span><span class="n">get_trees_total_variances</span><span class="p">()</span>
 
-<div class="viewcode-block" id="FanovaForest.compute_marginals"><a class="viewcode-back" href="../../../../api/deepcave.evaluators.epm.fanova_forest.html#deepcave.evaluators.epm.fanova_forest.FanovaForest.compute_marginals">[docs]</a>    <span class="k">def</span> <span class="nf">compute_marginals</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">hp_ids</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="nb">int</span><span class="p">],</span> <span class="n">depth</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
+<div class="viewcode-block" id="FanovaForest.compute_marginals">
+<a class="viewcode-back" href="../../../../api/deepcave.evaluators.epm.fanova_forest.html#deepcave.evaluators.epm.fanova_forest.FanovaForest.compute_marginals">[docs]</a>
+    <span class="k">def</span> <span class="nf">compute_marginals</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">hp_ids</span><span class="p">:</span> <span class="n">List</span><span class="p">[</span><span class="nb">int</span><span class="p">],</span> <span class="n">depth</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
 <span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">        Returns the marginal of selected parameters.</span>
 
@@ -875,7 +879,9 @@ <h1>Source code for deepcave.evaluators.epm.fanova_forest</h1><div class="highli
             <span class="bp">self</span><span class="o">.</span><span class="n">V_U_individual</span><span class="p">[</span><span class="n">hp_ids</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">V_U_individual</span><span class="p">)</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">V_U_total</span><span class="p">[</span><span class="n">hp_ids</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">V_U_total</span><span class="p">)</span>
 
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">V_U_individual</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">V_U_total</span></div></div>
+        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">V_U_individual</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">V_U_total</span></div>
+</div>
+
 </pre></div>
 
               </div>
@@ -904,7 +910,7 @@ <h1>Source code for deepcave.evaluators.epm.fanova_forest</h1><div class="highli
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