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  1. GEMMER GEMMER Public

    GEnome-wide tool for Multi-scale Modeling data Extraction and Representation for Saccharomyces cerevisiae | Mondeel TDGA, Crémazy F, Barberis M. | Bioinformatics | 2018 | http://doi.org/10.1093/bio…

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  2. ChIP-exo_Fkh1_Fkh2 ChIP-exo_Fkh1_Fkh2 Public

    ChIP-exo analysis highlights Fkh1 and Fkh2 transcription factors as hubs that integrate multi-scale networks in budding yeast | T.D.G.A. Mondeel, P. Holland, J. Nielsen and M. Barberis | 2019 | htt…

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  3. Autonomous_minimal_cell_cycle_oscillator Autonomous_minimal_cell_cycle_oscillator Public

    Clb3-centered regulations are recurrent across distinct parameter regions in minimal autonomous cell cycle oscillator designs | Thierry D.G.A. Mondeel, Oleksandr Ivanov, Hans V. Westerhoff, Wolfram…

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  4. Forkhead-mediated_regulation Forkhead-mediated_regulation Public

    A summarizing analysis of Fkh1,2 target genes as indicated by 6 ChIP binding studies and an overexpression and deletion study | https://doi.org/10.1016/j.csbj.2022.03.033

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  • Forkhead-mediated_regulation Public

    A summarizing analysis of Fkh1,2 target genes as indicated by 6 ChIP binding studies and an overexpression and deletion study | https://doi.org/10.1016/j.csbj.2022.03.033

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    Jupyter Notebook 0 0 0 0 Updated Sep 8, 2022
  • ChIP-exo_Fkh1_Fkh2 Public

    ChIP-exo analysis highlights Fkh1 and Fkh2 transcription factors as hubs that integrate multi-scale networks in budding yeast | T.D.G.A. Mondeel, P. Holland, J. Nielsen and M. Barberis | 2019 | https://doi.org/10.1093/nar/gkz603

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    HTML 1 0 0 0 Updated Mar 8, 2022
  • GEMMER Public

    GEnome-wide tool for Multi-scale Modeling data Extraction and Representation for Saccharomyces cerevisiae | Mondeel TDGA, Crémazy F, Barberis M. | Bioinformatics | 2018 | http://doi.org/10.1093/bioinformatics/bty052 |

    barberislab/GEMMER’s past year of commit activity
    PHP 1 1 0 0 Updated Feb 27, 2022
  • Autonomous_minimal_cell_cycle_oscillator Public

    Clb3-centered regulations are recurrent across distinct parameter regions in minimal autonomous cell cycle oscillator designs | Thierry D.G.A. Mondeel, Oleksandr Ivanov, Hans V. Westerhoff, Wolfram Liebermeister and Matteo Barberis | NPJ Syst. Biol. Appl. (2020) | https://doi.org/10.1038/s41540-020-0125-0

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    Jupyter Notebook 0 0 0 0 Updated Nov 14, 2020

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