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Issues list

evaluate using chipseq qc template for cutandrun output
#51 opened Oct 11, 2024 by abartlett004
test and potentially make templates for cell type annotation
#50 opened Sep 23, 2024 by abartlett004
Options for GRN with single cell enhancement New feature or request
#49 opened Sep 9, 2024 by lpantano
sc normalization and clustering enhancement New feature or request
#48 opened Aug 27, 2024 by lpantano
@eberdan
sc DE discussion enhancement New feature or request
#47 opened Aug 27, 2024 by lpantano
@abartlett004
DEseq report discussion documentation Improvements or additions to documentation enhancement New feature or request RNAseq
#45 opened Aug 22, 2024 by lpantano
cutandrun report elements
#43 opened Aug 7, 2024 by abartlett004
3
DEG rdata annotation assumes human reference
#41 opened Jul 15, 2024 by epartan
1
Support comparing multiple DESeq2 results
#37 opened Jun 25, 2024 by lpantano
@lpantano
Support multiple contrasts in the same report
#36 opened Jun 25, 2024 by lpantano
@lpantano
add checks for low count genes?
#35 opened Jun 24, 2024 by eberdan
potentially use this package for more palette options enhancement New feature or request
#34 opened Jun 24, 2024 by lpantano
make sanitize_datatable into package function
#29 opened May 31, 2024 by abartlett004
Feedback in development branch bug Something isn't working RNAseq
#28 opened May 29, 2024 by lpantano
@abartlett004
1
check samplesheet function to ensure files exist enhancement New feature or request RNAseq
#27 opened May 28, 2024 by abartlett004
introduce changes from Emma bug Something isn't working RNAseq
#20 opened May 8, 2024 by lpantano
@abartlett004
Updated common repository of gene sets (hallmark, reactome, etc).
#19 opened May 8, 2024 by lpantano
@lpantano
Common repository for lists of protein coding genes
#18 opened May 8, 2024 by lpantano
Common repository (dropbox?) for annotations to add to DE lists
#17 opened May 8, 2024 by lpantano
similar projects question Further information is requested
#13 opened Apr 26, 2024 by lpantano
Interactive volcano plot with glXYPlot enhancement New feature or request RNAseq
#12 opened Apr 25, 2024 by upendrabhattarai
Enrichment analysis flexibility enhancement New feature or request RNAseq
#11 opened Apr 25, 2024 by lpantano
DE - coefficient vs contrasts enhancement New feature or request RNAseq
#8 opened Apr 25, 2024 by lpantano
DE_template_example.Rmd - subset discussion question Further information is requested
#7 opened Apr 25, 2024 by lpantano
get sc script from Noor enhancement New feature or request
#3 opened Apr 25, 2024 by lpantano
ProTip! Follow long discussions with comments:>50.