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DMRichR v1.4.0
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@ben-laufer ben-laufer released this 23 Jul 00:54
· 38 commits to master since this release
v1.4.0
c1840a0
  • Added the sexCheck argument to processBismark() to confirm the sex of samples by using k-means clustering of the ratio of coverage for the Y chromosome and X chromosome. Developed by @hyeyeon-hwang.
  • GOplot() will now also slim GO terms using REVIGO and rank the terms based on dispensability.
  • GOfuncR() now supports all genomes.
  • methylLearn() heatmaps now display Z-scores and gene region annotations. Developed by @hyeyeon-hwang.
  • Improvements to densityPlot() and PCA().
  • Improvements to imports to reduce install time and remove install warnings.
  • Moved Bioconductor annotation database loading from DM.R to DMRichR::annotationDatabases().
  • Parallelized GREAT and GOfuncR and added enrichr:::.onAttach() to DM.R.
  • Simplification of RData from DM.R.
  • Major documentation updates that give an overview of the DM.R workflow and key DMRichR functions.
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