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Bento Reference Service

Reference data (genomes & annotations) service for the Bento platform.

Goals

  • Provide a well-known location for genomic reference materials within Bento nodes - both human and non-human
  • Provide a translation service for looking up annotations, returning responses containing genomic coordinates for genes, exons, etc.
  • Facilitate node-level ingestion of reference genomes
  • Implement the RefGet v2.0.0 specification for obtaining sequence data

Status

  • Bento-style genome ingestion: DONE
  • API endpoint permissions: DONE
  • RefGet v2.0.0 implementation: Partially done
  • Annotation service: Partially done
  • Tests: Partially done
  • Documentation: Not done

API

TODO