Bento Reference Service

Reference data (genomes & annotations) service for the Bento platform.

Goals

• Provide a well-known location for genomic reference materials within Bento nodes - both human and non-human
• Provide a translation service for looking up annotations, returning responses containing genomic coordinates for genes, exons, etc.
• Facilitate node-level ingestion of reference genomes
• Implement the RefGet v2.0.0 specification for obtaining sequence data

Status

• Bento-style genome ingestion: DONE
• API endpoint permissions: DONE
• RefGet v2.0.0 implementation: Partially done
• Annotation service: Partially done
• Tests: Partially done
• Documentation: Not done

API

TODO