Version 6.0.0

What's Changed

• refact: rewrite file/JSON display components as TypeScript by @davidlougheed in #416
• feat: monitoring by @v-rocheleau in #421
• Features/advanced search tables by @noctillion in #422
• lint: enforce "import type" for typescript by @davidlougheed in #423
• lint: check for hook misusage in lint step [redo] by @davidlougheed in #417
• fix: monitoring enabled env var in prod by @davidlougheed in #424
• refact: move drop-box-related code into drop box module by @davidlougheed in #425
• refact: rewrite some effect-state updates as functional updates by @davidlougheed in #426
• fix(explorer): use functional state updates to fix rendering loop by @davidlougheed in #428
• fix(explorer): fix variant querying not working by @davidlougheed in #429
• fix(manager): edge case when highlighting selected tab by @davidlougheed in #430
• refact: remove unneeded React default imports + abs imports by @davidlougheed in #431
• refact: add typing in some straightforward places by @davidlougheed in #432
• refact: remove use of deprecated defaultProps by @davidlougheed in #433
• refact: open grafana in new tab and user role check for display by @CowTrainer in #427
• feat(explorer): "excluded: found to be absent" for diseases + phenotypes by @davidlougheed in #435
• build(deps-dev): bump webpack from 5.92.1 to 5.94.0 by @dependabot in #436
• refact: new drop box JSON select form input + fixed JSON type by @davidlougheed in #437
• feat: scoped discovery config by @v-rocheleau in #404
• build(deps): bump body-parser and express by @dependabot in #440
• fix: file name prop on DownloadButton should be optional by @davidlougheed in #438
• refact: memoize ajv instance for given schema by @v-rocheleau in #441
• chore: remove onFocus data refresh by @davidlougheed in #442
• refact: use hooks in more places + eliminate projects double-fetch by @davidlougheed in #434
• chore: remove a check for the old Grafana iframe tab by @davidlougheed in #444
• refact: split up manager drop box content into component files by @davidlougheed in #439
• chore: update bento-charts to 2.9.0 by @davidlougheed in #445
• fix(manager): dataset edit keeping old form values by @davidlougheed in #446
• refact(explorer): rewrite DataTypeExplorationModal as functional+TS by @davidlougheed in #447
• refact: rewrite App as TSX + remove dead pingInterval code by @davidlougheed in #448
• feat: show a message when the reference service is down by @davidlougheed in #449
• chore: update base image, lockfile deps, typescript 5.6 by @davidlougheed in #452
• refact: rewrite service detail pages as .tsx + show not found by @davidlougheed in #450
• chore: bump version to 6.0.0 by @davidlougheed in #453
• refact(manager): rewrite much of run content to be TypeScript by @davidlougheed in #451
• fix: dropbox form select for nested files by @v-rocheleau in #455
• chore!: remove service itemsByArtifact + rm old fallback code by @davidlougheed in #454
• chore(deps): update dev base image, ant design, lockfile deps by @davidlougheed in #456

New Contributors

• @CowTrainer made their first contribution in #427

Full Changelog: v5.0.1...v6.0.0

Version 5.0.1

What's Changed

• fix(explorer): fix repeated auto-queries not working by @davidlougheed in #418
• fix: project json schemas types query in a hook by @v-rocheleau in #419
• chore: bump version to 5.0.1 by @davidlougheed in #420

Full Changelog: v5.0.0...v5.0.1

Version 5.0.0

What's Changed

• chore: debug log to help diagnose WES state update race conds by @davidlougheed in #366
• fix(propTypes): biosample sampled_tissue no longer required by @gsfk in #367
• refact: upgrade to Ant Design 4 by @davidlougheed in #362
• chore(build): add alias for source root to webpack config by @davidlougheed in #369
• refact(manager): rewrite workflow run forms as ant4 + import shorten by @davidlougheed in #371
• refact(manager): linked field set components to func+ant4 by @davidlougheed in #370
• refact(manager): project JSON Schema form to ant4 + schema input by @davidlougheed in #372
• refact(explorer): convert discovery search form to ant 4 by @davidlougheed in #373
• feat(manager): add grants/groups viewer by @davidlougheed in #312
• refact: rewrite routes to react router 5.1 style by @davidlougheed in #374
• chore: remove @ant-design/compatible by @davidlougheed in #375
• fix(manager): bad workflow route handling by @davidlougheed in #378
• refact(explorer): RoutedIndividualContent, new table expand syntax by @davidlougheed in #377
• feat(manager): render workflow run outputs in a tab, if available by @davidlougheed in #368
• chore(deps-dev): bump follow-redirects from 1.15.5 to 1.15.6 by @dependabot in #380
• feat(manager): add run wizard screen for export workflows by @davidlougheed in #379
• feat(header): don't nest manager + services in dropdown by @davidlougheed in #381
• fix(manager): handle null workflow data type in workflow list filter by @davidlougheed in #382
• refact: replace react-json-view with react-18-compat lib by @davidlougheed in #383
• fix(manager): dataset form (fix it not working) by @davidlougheed in #385
• chore(deps-dev): bump webpack-dev-middleware from 5.3.3 to 5.3.4 by @dependabot in #386
• fix: add excluded column to diseases table by @v-rocheleau in #387
• refact: React 18, React Router 6, bento_charts 2.6, -victory by @davidlougheed in #384
• chore(manager): remove redundant workflows tab by @davidlougheed in #389
• feat(explorer): show biosample ID with experiment data by @davidlougheed in #390
• refact: move from ant 4 to 5 by @davidlougheed in #391
• lint(manager): unused DataTypeSelect component by @davidlougheed in #393
• refact: remove deprecated Ant API usages by @davidlougheed in #394
• refact: handle new Katsu overview format by @davidlougheed in #392
• site footer: link bento logo to bento page by @gsfk in #395
• feat(manager): updated DRS object search with detail+delete by @davidlougheed in #396
• chore: typescript support + linting + authz hook fix by @davidlougheed in #398
• refact(utils): rewrite some utils as typescript by @davidlougheed in #399
• feat(manager): add column indicating if DRS perms resource is valid by @davidlougheed in #402
• chore(deps): bump react-pdf from 7.7.1 to 7.7.3 by @dependabot in #403
• feat: permissions awareness (part 1) by @davidlougheed in #397
• feat: permissions awareness pt. 2 + access manager UI by @davidlougheed in #400
• feat: integrate reference service 0.2.0 features by @davidlougheed in #405
• Ensure Consistent Ordering of Data Types in Advanced Search Dropdown by @SanjeevLakhwani in #408
• feat(explorer): search results experiment type filtering by @noctillion in #406
• Unified eslint and prettier by @SanjeevLakhwani in #409
• Update IndividualVariants.js by @noctillion in #401
• chore(deps-dev): bump braces from 3.0.2 to 3.0.3 by @dependabot in #411
• add text search to drop-box by @noctillion in #414
• chore: update react-pdf + rewrite PdfDisplay as TS by @davidlougheed in #415
• fix: dataset data-types count loading by @v-rocheleau in #413

Full Changelog: v4.1.4...v5.0.0

Version 4.1.4

What's Changed

• fix: update bento_auth_js to 3.2.6 by @davidlougheed in #365

Full Changelog: v4.1.3...v4.1.4

Version 4.1.3

What's Changed

• "negated" -> "excluded" for phenotypic features by @gsfk in #364

Full Changelog: v4.1.2...v4.1.3

Version 4.1.2

What's Changed

• refact: use bento auth JS 3.x by @davidlougheed in #363

Full Changelog: v4.1.1...v4.1.2

Version 4.1.1

What's Changed

• refact: functional DataUseDisplay component by @davidlougheed in #358
• fix: stringify dats_file json in dataset edit form by @v-rocheleau in #360
• chore: bump version to 4.1.1 + update lockfile deps by @davidlougheed in #361

Full Changelog: v4.1.0...v4.1.1

Version 4.1.0

What's Changed

• chore: update copyright to 2024 by @davidlougheed in #342
• feat: various improvements to file display by @davidlougheed in #345
• Features/handle fastapi errors by @gsfk in #344
• feat(explorer): add result counts to search result tab names by @davidlougheed in #347
• refact: factor out auth code into bento-auth-js library by @SanjeevLakhwani in #325
• fix(overview): clickable Other + needless extra code for Other by @davidlougheed in #346
• refact: rewrite service info components to be functional + fix links by @davidlougheed in #348
• fix(manager): out-of-order WES event handling by @davidlougheed in #343
• fix: missed state selector updates from auth-js refact by @davidlougheed in #349
• chore: update bento-auth-js to 2.2.1 by @davidlougheed in #350
• patch study_types pie chart by @gsfk in #352
• refact: use bento-auth-js sign out factory hook by @davidlougheed in #351
• chore: bump version to 4.1.0 + update lockfile deps by @davidlougheed in #353
• fix: misc errors that are showing up in console by @davidlougheed in #354
• refact: functional component for SchemaTree by @davidlougheed in #355
• refact(overview): functional component for ExperimentsSummary by @davidlougheed in #356
• refact(explorer): rewrite ExplorerSearchContent to be func by @davidlougheed in #357

Full Changelog: v4.0.0...v4.1.0

Version 4.0.0

What's Changed

• Support new authz API by @davidlougheed in #314
• [15] feat: implement new workflow system by @davidlougheed in #282
• [15] chore: modify the statistic title in variants overview by @noctillion in #328
• [15] feat: reload overview summary when a WES run completes by @davidlougheed in #326
• [15] feat: phenopacket v2 frontend integration by @v-rocheleau in #311
• [15] fix(manager): only load drop box when we need it/have perms by @davidlougheed in #327
• refact(manager): rewrite run list as functional component + tweak style by @davidlougheed in #329
• refact(explorer): use context instead of redux for explorer individual info by @davidlougheed in #330
• Fix dataset data-types summaries by @v-rocheleau in #331
• fix(manager): fix workflow run end time sort order by @davidlougheed in #332
• fix: treatment dose intervals table by @v-rocheleau in #334
• feat(manager): render workflow input help text, if present by @davidlougheed in #333
• feat(manager): allow service url interp. in workflow input enum urls by @davidlougheed in #335
• fix biosample procedure props and rendering by @v-rocheleau in #338
• feat(manager): genome list view by @davidlougheed in #337
• feat: provide link to biosample from genomic interpretations if applicable by @v-rocheleau in #339
• feat(explorer): support track-specified/custom reference genomes by @davidlougheed in #336
• fix datasetResources reducer by @v-rocheleau in #340
• chore: bump version to 4.0.0 + update lockfile deps by @davidlougheed in #341

Full Changelog: v3.2.2...v4.0.0

Version 3.2.2

What's Changed

• fix: file view modal display for wide content (e.g., spreadsheets) by @davidlougheed in #324

Full Changelog: v3.2.1...v3.2.2