BIDS-2.0 #9
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| name: validate_datasets | |
| on: | |
| push: | |
| branches: ['master'] | |
| pull_request: | |
| branches: ['**'] | |
| # create: | |
| # branches: [master] | |
| # tags: ['**'] | |
| # schedule: | |
| # - cron: "0 4 * * 1" | |
| concurrency: | |
| group: ${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| platform: [ubuntu-latest] # , macos-latest, windows-latest] | |
| bids-validator: [master, stable] | |
| python-version: ["3.11"] | |
| runs-on: ${{ matrix.platform }} | |
| env: | |
| TZ: Europe/Berlin | |
| FORCE_COLOR: 1 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| # Setup Python with bst | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: "Install build dependencies" | |
| run: pip install --upgrade build twine | |
| - name: "Build source distribution and wheel" | |
| run: python -m build tools/schemacode | |
| - name: "Check distribution metadata" | |
| run: twine check tools/schemacode/dist/* | |
| - name: "Install bst tools from the build" | |
| run: pip install $( ls tools/schemacode/dist/*.whl )[all] | |
| # Setup validator | |
| - name: Set up Node.js | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: 18 | |
| - name: Install BIDS validator (stable) | |
| if: "matrix.bids-validator == 'stable'" | |
| run: | | |
| npm install -g bids-validator | |
| - name: Install BIDS validator (master) | |
| if: "matrix.bids-validator == 'master'" | |
| run: | | |
| pushd .. | |
| # Get npm 7+ | |
| npm install -g npm | |
| git clone --depth 1 https://github.com/bids-standard/bids-validator | |
| cd bids-validator | |
| # Generate the full development node_modules | |
| npm clean-install | |
| # Build & bundle the bids-validator CLI package | |
| npm -w bids-validator run build | |
| # Generate a package to install globally | |
| npm -w bids-validator pack | |
| # Install the package globally | |
| bash -c "npm install -g bids-validator-*.tgz" | |
| popd | |
| - name: Display versions and environment information | |
| run: | | |
| echo $TZ | |
| date | |
| echo "npm"; npm --version | |
| echo "node"; node --version | |
| echo "bids-validator"; bids-validator --version | |
| echo "python"; python --version | |
| # Checkout bids-examples | |
| - uses: actions/checkout@v4 | |
| with: | |
| repository: bids-standard/bids-examples | |
| path: bids-examples | |
| - name: Validate all BIDS datasets using bids-validator without migration | |
| run: | | |
| cat ./run_tests.sh | |
| bash ./run_tests.sh | |
| working-directory: bids-examples | |
| - name: Migrate all BIDS datasets | |
| run: | | |
| /bin/ls */dataset_description.json | sed -e 's,/.*,,g' | xargs bst migrate-datasets | |
| shell: bash | |
| working-directory: bids-examples | |
| - name: Validate all BIDS datasets using bids-validator after migration | |
| run: | | |
| VALIDATOR_ARGS=" ...TODO point to schema" bash ./run_tests.sh | |
| shell: bash | |
| working-directory: bids-examples |