Merge branch 'master' into target-for-arm-osx #4
Workflow file for this run
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| name: Upload (osx-arm64) | |
| on: | |
| push: | |
| branches: | |
| - target-for-arm-osx | |
| jobs: | |
| build-upload-osx-arm: | |
| name: osx-arm64 Upload | |
| if: github.repository == 'bioconda/bioconda-recipes' | |
| runs-on: macOS-14 # M1 | |
| strategy: | |
| fail-fast: false | |
| max-parallel: 4 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| # TODO: bail if there's no osx-arm64 recipes | |
| # - run: | |
| # name: Check for Additional Platforms | |
| # command: ./.circleci/check-for-additional-platforms.sh "${CIRCLE_SHA1}~1 ${CIRCLE_SHA1}" "build_and_upload" | |
| - name: set path | |
| run: echo "/opt/mambaforge/bin" >> $GITHUB_PATH | |
| - name: Fetch conda install script | |
| run: | | |
| wget https://raw.githubusercontent.com/bioconda/bioconda-common/master/{install-and-set-up-conda,configure-conda,common}.sh | |
| - name: Restore cache | |
| id: cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: /opt/mambaforge | |
| key: ${{ runner.os }}--master--${{ hashFiles('install-and-set-up-conda.sh', 'common.sh', 'configure-conda.sh') }} | |
| - name: Set up bioconda-utils | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| run: bash install-and-set-up-conda.sh | |
| # This script can be used to reconfigure conda to use the right channel setup. | |
| # This has to be done after the cache is restored, because | |
| # the channel setup is not cached as it resides in the home directory. | |
| # We could use a system-wide (and therefore cached) channel setup, | |
| # but mamba does not support that at the time of implementation | |
| # (it ignores settings made with --system). | |
| - name: Configure conda | |
| run: bash configure-conda.sh | |
| - name: Build and Upload | |
| env: | |
| QUAY_LOGIN: ${{ secrets.QUAY_LOGIN }} | |
| QUAY_OAUTH_TOKEN: ${{ secrets.QUAY_OAUTH_TOKEN }} | |
| ANACONDA_TOKEN: ${{ secrets.ANACONDA_TOKEN }} | |
| INVOLUCRO_AUTH: ${{ secrets.INVOLUCRO_AUTH }} | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| # Mimic circleci | |
| OSTYPE: "darwin" | |
| CI: "true" | |
| run: | | |
| set -e | |
| eval "$(conda shell.bash hook)" | |
| conda activate bioconda | |
| # Use SDK with arm64 support | |
| export MACOSX_DEPLOYMENT_TARGET=11.0 | |
| # The SDK isn't actually cached, so reinstall it | |
| run_conda_forge_build_setup | |
| bioconda-utils handle-merged-pr recipes config.yml \ | |
| --repo bioconda/bioconda-recipes \ | |
| --git-range ${GITHUB_SHA}~1 ${GITHUB_SHA} \ | |
| --fallback build \ | |
| --artifact-source github-actions \ | |
| --dryrun | |
| # TODO: remove dry-run after testing |