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[UPDATE] Updating json schemas
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PauAndrio committed May 24, 2024
1 parent f82f96e commit 0bec217
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Showing 17 changed files with 17 additions and 17 deletions.
2 changes: 1 addition & 1 deletion biobb_dna/json_schemas/average_stiffness.json
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"$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/average_stiffness",
"name": "biobb_dna AverageStiffness",
"title": "Calculate average stiffness constants for each base pair of a trajectory's series.",
"description": null,
"description": "Calculate the average stiffness constants for each base pair of a trajectory's series. The input is a .ser file with the helical parameter values for each base/basepair. The output is a .csv file with the average stiffness constants for each base pair and a .jpg file with a plot of the average stiffness constants for each base pair.",
"type": "object",
"info": {
"wrapped_software": {
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2 changes: 1 addition & 1 deletion biobb_dna/json_schemas/basepair_stiffness.json
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"$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/basepair_stiffness",
"name": "biobb_dna BPStiffness",
"title": "Calculate stiffness constants matrix between all six helical parameters for a single base pair step.",
"description": null,
"description": "Calculate stiffness constants matrix between all six helical parameters for a single base pair step.",
"type": "object",
"info": {
"wrapped_software": {
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2 changes: 1 addition & 1 deletion biobb_dna/json_schemas/biobb_canal.json
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"$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/biobb_canal",
"name": "biobb_dna Canal",
"title": "Wrapper for the Canal executable that is part of the Curves+ software suite.",
"description": null,
"description": "The Canal program is used to analyze the curvature of DNA structures.",
"type": "object",
"info": {
"wrapped_software": {
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2 changes: 1 addition & 1 deletion biobb_dna/json_schemas/biobb_canion.json
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"$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/biobb_canion",
"name": "biobb_dna Canion",
"title": "Wrapper for the Canion executable that is part of the Curves+ software suite.",
"description": null,
"description": "Analyzes the trajectory of ions around a DNA molecule.",
"type": "object",
"info": {
"wrapped_software": {
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2 changes: 1 addition & 1 deletion biobb_dna/json_schemas/biobb_curves.json
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"$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/biobb_curves",
"name": "biobb_dna Curves",
"title": "Wrapper for the Cur+ executable that is part of the Curves+ software suite.",
"description": null,
"description": "The Cur+ program is used to analyze the structure of nucleic acids and their complexes.",
"type": "object",
"info": {
"wrapped_software": {
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2 changes: 1 addition & 1 deletion biobb_dna/json_schemas/bipopulations.json
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"$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/bipopulations",
"name": "biobb_dna BIPopulations",
"title": "Calculate BI/BII populations from epsilon and zeta parameters.",
"description": null,
"description": "Calculate BI/BII populations from epsilon and zeta parameters.",
"type": "object",
"info": {
"wrapped_software": {
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2 changes: 1 addition & 1 deletion biobb_dna/json_schemas/canonicalag.json
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"$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/canonicalag",
"name": "biobb_dna CanonicalAG",
"title": "Calculate Canonical Alpha/Gamma populations from alpha and gamma parameters.",
"description": null,
"description": "Calculate Canonical Alpha/Gamma populations from alpha and gamma parameters.",
"type": "object",
"info": {
"wrapped_software": {
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2 changes: 1 addition & 1 deletion biobb_dna/json_schemas/dna_averages.json
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"$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/dna_averages",
"name": "biobb_dna HelParAverages",
"title": "Load .ser file for a given helical parameter and read each column corresponding to a base calculating average over each one.",
"description": null,
"description": "Calculate average values for each base pair and save them in a .csv file.",
"type": "object",
"info": {
"wrapped_software": {
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2 changes: 1 addition & 1 deletion biobb_dna/json_schemas/dna_bimodality.json
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"$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/dna_bimodality",
"name": "biobb_dna HelParBimodality",
"title": "Determine binormality/bimodality from a helical parameter series dataset.",
"description": null,
"description": "Determine binormality/bimodality from a helical parameter series dataset.",
"type": "object",
"info": {
"wrapped_software": {
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2 changes: 1 addition & 1 deletion biobb_dna/json_schemas/dna_timeseries.json
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"$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/dna_timeseries",
"name": "biobb_dna HelParTimeSeries",
"title": "Created time series and histogram plots for each base pair from a helical parameter series file.",
"description": null,
"description": "The helical parameter series file is expected to be a table, with the first column being an index and the rest the helical parameter values for each base/basepair.",
"type": "object",
"info": {
"wrapped_software": {
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2 changes: 1 addition & 1 deletion biobb_dna/json_schemas/interbpcorr.json
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"$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/interbpcorr",
"name": "biobb_dna InterBasePairCorrelation",
"title": "Calculate correlation between all base pairs of a single sequence and for a single helical parameter.",
"description": null,
"description": "Calculate correlation between neighboring base pairs and pairs of helical parameters.",
"type": "object",
"info": {
"wrapped_software": {
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2 changes: 1 addition & 1 deletion biobb_dna/json_schemas/interhpcorr.json
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"$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/interhpcorr",
"name": "biobb_dna InterHelParCorrelation",
"title": "Calculate correlation between helical parameters for a single inter-base pair.",
"description": null,
"description": "Calculate correlation between helical parameters for a single inter-base pair.",
"type": "object",
"info": {
"wrapped_software": {
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2 changes: 1 addition & 1 deletion biobb_dna/json_schemas/interseqcorr.json
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"$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/interseqcorr",
"name": "biobb_dna InterSequenceCorrelation",
"title": "Calculate correlation between all base pairs of a single sequence and for a single helical parameter.",
"description": null,
"description": "Calculate correlation between all base pairs of a single sequence and for a single helical parameter.",
"type": "object",
"info": {
"wrapped_software": {
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2 changes: 1 addition & 1 deletion biobb_dna/json_schemas/intrabpcorr.json
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"$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/intrabpcorr",
"name": "biobb_dna IntraBasePairCorrelation",
"title": "Calculate correlation between all intra-base pairs of a single sequence and for a single helical parameter.",
"description": null,
"description": "Calculate correlation between neighboring base pairs and pairs of helical parameters.",
"type": "object",
"info": {
"wrapped_software": {
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2 changes: 1 addition & 1 deletion biobb_dna/json_schemas/intrahpcorr.json
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"$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/intrahpcorr",
"name": "biobb_dna IntraHelParCorrelation",
"title": "Calculate correlation between helical parameters for a single intra-base pair.",
"description": null,
"description": "Calculate correlation between helical parameters for a single intra-base pair.",
"type": "object",
"info": {
"wrapped_software": {
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2 changes: 1 addition & 1 deletion biobb_dna/json_schemas/intraseqcorr.json
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"$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/intraseqcorr",
"name": "biobb_dna IntraSequenceCorrelation",
"title": "Calculate correlation between all intra-base pairs of a single sequence and for a single helical parameter.",
"description": null,
"description": "Calculate correlation between all intra-base pairs of a single sequence and for a single helical parameter.",
"type": "object",
"info": {
"wrapped_software": {
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2 changes: 1 addition & 1 deletion biobb_dna/json_schemas/puckering.json
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"$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/puckering",
"name": "biobb_dna Puckering",
"title": "Calculate Puckering from phase parameters.",
"description": null,
"description": "Calculate North/East/West/South distribution of sugar puckering backbone torsions.",
"type": "object",
"info": {
"wrapped_software": {
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