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/* * README * * Copyright 2012 Chaitanya Talnikar <chaitukca@gmail.com> * */ Welcome to the biographer server. The server provides the web2py application to provide services for the biographer simulator. The service mainly used is the simulation of SBML files using libscopes. To use the server it can be copied to the web2py applications directory. But first we need to install the necessary dependencies and libraries. Dependencies: If you are using Ubuntu, install necessary dependences to run the server and build the libraries: make deps Otherwise please refer below for a list of dependencies: #gcc, make and other stuff build-essential #server application python-web2py #required to build libSBML libxml2-dev #required to build libscopes python-dev swig #optional: to ensure that the package can be uninstalled later checkinstall Build libraries: Install libsbml first as libscopes is dependent on it. Download it's latest source tar from: http://sourceforge.net/projects/sbml/files/libsbml As building libSBML for every platform varies widely, here is a small set of commands to help you install it: tar -xzf libSBML-*-src.tar.gz cd libsbml-* ./configure --with-python make sudo checkinstall Fetch and build libscopes by executing the command: make libscopes Setup the server: Create required directories by running the command given below: make
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