Merge branch 'master' of https://github.com/biolink/biolink-model

biolink · Aug 11, 2023 · 5d0c141 · 5d0c141
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diff --git a/biolink-model.graphql b/biolink-model.graphql
@@ -1,5 +1,5 @@
 # metamodel_version: 1.7.0
-# version: 3.5.3
+# version: 3.5.4
 type AccessibleDnaRegion implements GenomicEntity, ChemicalEntityOrGeneOrGeneProduct, PhysicalEssence, OntologyClass
   {
     id: String!

diff --git a/biolink-model.owl.ttl b/biolink-model.owl.ttl
diff --git a/biolink-model.proto b/biolink-model.proto
@@ -1,7 +1,7 @@
  syntax="proto3";
  package
 // metamodel_version: 1.7.0
-// version: 3.5.3
+// version: 3.5.4
 // A region (or regions) of a chromatinized genome that has been measured to be more accessible to an enzyme such as DNase-I or Tn5 Transpose
 message AccessibleDnaRegion
  {

diff --git a/biolink-model.shacl.ttl b/biolink-model.shacl.ttl
diff --git a/biolink-model.shexj b/biolink-model.shexj
@@ -1,5 +1,5 @@
 # metamodel_version: 1.7.0
-# version: 3.5.3
+# version: 3.5.4
 {
    "type": "Schema",
    "@context": [

diff --git a/biolink-model.ttl b/biolink-model.ttl
diff --git a/biolink-modeln.shex b/biolink-modeln.shex
@@ -1,5 +1,5 @@
 # metamodel_version: 1.7.0
-# version: 3.5.3
+# version: 3.5.4
 BASE <https://w3id.org/biolink/vocab/>
 PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>

diff --git a/biolink-modeln.shexj b/biolink-modeln.shexj
@@ -1,5 +1,5 @@
 # metamodel_version: 1.7.0
-# version: 3.5.3
+# version: 3.5.4
 {
    "type": "Schema",
    "@context": [

diff --git a/biolink/model.py b/biolink/model.py
@@ -1,5 +1,5 @@
 # Auto generated from biolink-model.yaml by pythongen.py version: 0.9.0
-# Generation date: 2023-08-07T17:17:28
+# Generation date: 2023-08-10T23:59:29
 # Schema: Biolink-Model
 #
 # id: https://w3id.org/biolink/biolink-model
@@ -25,7 +25,7 @@
 from linkml_runtime.utils.metamodelcore import Bool, URIorCURIE, XSDDate, XSDTime
 
 metamodel_version = "1.7.0"
-version = "3.5.3"
+version = "3.5.4"
 
 # Overwrite dataclasses _init_fn to add **kwargs in __init__
 dataclasses._init_fn = dataclasses_init_fn_with_kwargs

diff --git a/biolink/pydanticmodel.py b/biolink/pydanticmodel.py
@@ -12,7 +12,7 @@
 
 
 metamodel_version = "None"
-version = "3.5.3"
+version = "3.5.4"
 
 class WeakRefShimBaseModel(BaseModel):
    __slots__ = '__weakref__'

diff --git a/context.jsonld b/context.jsonld
@@ -1,7 +1,7 @@
 {
    "comments": {
       "description": "Auto generated by LinkML jsonld context generator",
-      "generation_date": "2023-08-07T17:16:37",
+      "generation_date": "2023-08-10T23:58:41",
       "source": "biolink-model.yaml"
    },
    "@context": {

diff --git a/contextn.jsonld b/contextn.jsonld
@@ -1,7 +1,7 @@
 {
    "comments": {
       "description": "Auto generated by LinkML jsonld context generator",
-      "generation_date": "2023-08-07T17:16:42",
+      "generation_date": "2023-08-10T23:58:46",
       "source": "biolink-model.yaml"
    },
    "@context": {

diff --git a/golr-views/RNA_product_config.yaml b/golr-views/RNA_product_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: RNA_product
+# metamodel_version: 1.7.0# version: 3.5.4id: RNA_product
 schema_generating: true
 display_name: RNA product
 document_category: RNA product

diff --git a/golr-views/RNA_product_isoform_config.yaml b/golr-views/RNA_product_isoform_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: RNA_product_isoform
+# metamodel_version: 1.7.0# version: 3.5.4id: RNA_product_isoform
 schema_generating: true
 description: Represents a protein that is a specific isoform of the canonical or reference
   RNA

diff --git a/golr-views/accessible_dna_region_config.yaml b/golr-views/accessible_dna_region_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: accessible_dna_region
+# metamodel_version: 1.7.0# version: 3.5.4id: accessible_dna_region
 schema_generating: true
 description: A region (or regions) of a chromatinized genome that has been measured
   to be more accessible to an enzyme such as DNase-I or Tn5 Transpose

diff --git a/golr-views/activity_config.yaml b/golr-views/activity_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: activity
+# metamodel_version: 1.7.0# version: 3.5.4id: activity
 schema_generating: true
 description: An activity is something that occurs over a period of time and acts upon
   or with entities; it may include consuming, processing, transforming, modifying,

diff --git a/golr-views/agent_config.yaml b/golr-views/agent_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: agent
+# metamodel_version: 1.7.0# version: 3.5.4id: agent
 schema_generating: true
 description: person, group, organization or project that provides a piece of information
   (i.e. a knowledge association)

diff --git a/golr-views/anatomical_entity_config.yaml b/golr-views/anatomical_entity_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: anatomical_entity
+# metamodel_version: 1.7.0# version: 3.5.4id: anatomical_entity
 schema_generating: true
 description: A subcellular location, cell type or gross anatomical part
 display_name: anatomical entity

diff --git a/golr-views/anatomical_entity_to_anatomical_entity_ontogenic_association_config.yaml b/golr-views/anatomical_entity_to_anatomical_entity_ontogenic_association_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: anatomical_entity_to_anatomical_entity_ontogenic_association
+# metamodel_version: 1.7.0# version: 3.5.4id: anatomical_entity_to_anatomical_entity_ontogenic_association
 schema_generating: true
 description: A relationship between two anatomical entities where the relationship
   is ontogenic, i.e. the two entities are related by development. A number of different

diff --git a/golr-views/anatomical_entity_to_anatomical_entity_part_of_association_config.yaml b/golr-views/anatomical_entity_to_anatomical_entity_part_of_association_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: anatomical_entity_to_anatomical_entity_part_of_association
+# metamodel_version: 1.7.0# version: 3.5.4id: anatomical_entity_to_anatomical_entity_part_of_association
 schema_generating: true
 description: A relationship between two anatomical entities where the relationship
   is mereological, i.e the two entities are related by parthood. This includes relationships

diff --git a/golr-views/article_config.yaml b/golr-views/article_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: article
+# metamodel_version: 1.7.0# version: 3.5.4id: article
 schema_generating: true
 description: "a piece of writing on a particular topic presented as a stand-alone\
   \  section of a larger publication\t  "

diff --git a/golr-views/association_config.yaml b/golr-views/association_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: association
+# metamodel_version: 1.7.0# version: 3.5.4id: association
 schema_generating: true
 description: A typed association between two entities, supported by evidence
 display_name: association

diff --git a/golr-views/attribute_config.yaml b/golr-views/attribute_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: attribute
+# metamodel_version: 1.7.0# version: 3.5.4id: attribute
 schema_generating: true
 description: A property or characteristic of an entity. For example, an apple may
   have properties such as color, shape, age, crispiness. An environmental sample may

diff --git a/golr-views/bacterium_config.yaml b/golr-views/bacterium_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: bacterium
+# metamodel_version: 1.7.0# version: 3.5.4id: bacterium
 schema_generating: true
 description: A member of a group of unicellular microorganisms lacking a nuclear membrane,
   that reproduce by binary fission and are often motile.

diff --git a/golr-views/behavior_config.yaml b/golr-views/behavior_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: behavior
+# metamodel_version: 1.7.0# version: 3.5.4id: behavior
 schema_generating: true
 display_name: behavior
 document_category: behavior

diff --git a/golr-views/behavior_to_behavioral_feature_association_config.yaml b/golr-views/behavior_to_behavioral_feature_association_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: behavior_to_behavioral_feature_association
+# metamodel_version: 1.7.0# version: 3.5.4id: behavior_to_behavioral_feature_association
 schema_generating: true
 description: An association between an mixture behavior and a behavioral feature manifested
   by the individual exhibited or has exhibited the behavior.

diff --git a/golr-views/behavioral_exposure_config.yaml b/golr-views/behavioral_exposure_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: behavioral_exposure
+# metamodel_version: 1.7.0# version: 3.5.4id: behavioral_exposure
 schema_generating: true
 description: A behavioral exposure is a factor relating to behavior impacting an individual.
 display_name: behavioral exposure

diff --git a/golr-views/behavioral_feature_config.yaml b/golr-views/behavioral_feature_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: behavioral_feature
+# metamodel_version: 1.7.0# version: 3.5.4id: behavioral_feature
 schema_generating: true
 description: A phenotypic feature which is behavioral in nature.
 display_name: behavioral feature

diff --git a/golr-views/biological_process_config.yaml b/golr-views/biological_process_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: biological_process
+# metamodel_version: 1.7.0# version: 3.5.4id: biological_process
 schema_generating: true
 description: One or more causally connected executions of molecular functions
 display_name: biological process

diff --git a/golr-views/biological_process_or_activity_config.yaml b/golr-views/biological_process_or_activity_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: biological_process_or_activity
+# metamodel_version: 1.7.0# version: 3.5.4id: biological_process_or_activity
 schema_generating: true
 description: Either an individual molecular activity, or a collection of causally
   connected molecular activities in a biological system.

diff --git a/golr-views/biological_sex_config.yaml b/golr-views/biological_sex_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: biological_sex
+# metamodel_version: 1.7.0# version: 3.5.4id: biological_sex
 schema_generating: true
 display_name: biological sex
 document_category: biological sex

diff --git a/golr-views/biotic_exposure_config.yaml b/golr-views/biotic_exposure_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: biotic_exposure
+# metamodel_version: 1.7.0# version: 3.5.4id: biotic_exposure
 schema_generating: true
 description: An external biotic exposure is an intake of (sometimes pathological)
   biological organisms (including viruses).

diff --git a/golr-views/book_chapter_config.yaml b/golr-views/book_chapter_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: book_chapter
+# metamodel_version: 1.7.0# version: 3.5.4id: book_chapter
 schema_generating: true
 display_name: book chapter
 document_category: book chapter

diff --git a/golr-views/book_config.yaml b/golr-views/book_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: book
+# metamodel_version: 1.7.0# version: 3.5.4id: book
 schema_generating: true
 description: This class may rarely be instantiated except if use cases of a given
   knowledge graph support its utility.

diff --git a/golr-views/case_config.yaml b/golr-views/case_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: case
+# metamodel_version: 1.7.0# version: 3.5.4id: case
 schema_generating: true
 description: An individual (human) organism that has a patient role in some clinical
   context.

diff --git a/golr-views/case_to_phenotypic_feature_association_config.yaml b/golr-views/case_to_phenotypic_feature_association_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: case_to_phenotypic_feature_association
+# metamodel_version: 1.7.0# version: 3.5.4id: case_to_phenotypic_feature_association
 schema_generating: true
 description: An association between a case (e.g. individual patient) and a phenotypic
   feature in which the individual has or has had the phenotype.

diff --git a/golr-views/causal_gene_to_disease_association_config.yaml b/golr-views/causal_gene_to_disease_association_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: causal_gene_to_disease_association
+# metamodel_version: 1.7.0# version: 3.5.4id: causal_gene_to_disease_association
 schema_generating: true
 display_name: causal gene to disease association
 document_category: causal gene to disease association

diff --git a/golr-views/cell_config.yaml b/golr-views/cell_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: cell
+# metamodel_version: 1.7.0# version: 3.5.4id: cell
 schema_generating: true
 display_name: cell
 document_category: cell

diff --git a/golr-views/cell_line_as_a_model_of_disease_association_config.yaml b/golr-views/cell_line_as_a_model_of_disease_association_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: cell_line_as_a_model_of_disease_association
+# metamodel_version: 1.7.0# version: 3.5.4id: cell_line_as_a_model_of_disease_association
 schema_generating: true
 display_name: cell line as a model of disease association
 document_category: cell line as a model of disease association

diff --git a/golr-views/cell_line_config.yaml b/golr-views/cell_line_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: cell_line
+# metamodel_version: 1.7.0# version: 3.5.4id: cell_line
 schema_generating: true
 display_name: cell line
 document_category: cell line

diff --git a/golr-views/cell_line_to_disease_or_phenotypic_feature_association_config.yaml b/golr-views/cell_line_to_disease_or_phenotypic_feature_association_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: cell_line_to_disease_or_phenotypic_feature_association
+# metamodel_version: 1.7.0# version: 3.5.4id: cell_line_to_disease_or_phenotypic_feature_association
 schema_generating: true
 description: An relationship between a cell line and a disease or a phenotype, where
   the cell line is derived from an individual with that disease or phenotype.

diff --git a/golr-views/cellular_component_config.yaml b/golr-views/cellular_component_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: cellular_component
+# metamodel_version: 1.7.0# version: 3.5.4id: cellular_component
 schema_generating: true
 description: A location in or around a cell
 display_name: cellular component

diff --git a/golr-views/cellular_organism_config.yaml b/golr-views/cellular_organism_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: cellular_organism
+# metamodel_version: 1.7.0# version: 3.5.4id: cellular_organism
 schema_generating: true
 description: ''
 display_name: cellular organism

diff --git a/golr-views/chemical_affects_gene_association_config.yaml b/golr-views/chemical_affects_gene_association_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: chemical_affects_gene_association
+# metamodel_version: 1.7.0# version: 3.5.4id: chemical_affects_gene_association
 schema_generating: true
 description: Describes an effect that a chemical has on a gene or gene product (e.g.
   an impact of on its abundance, activity, localization, processing, expression, etc.)

diff --git a/golr-views/chemical_entity_assesses_named_thing_association_config.yaml b/golr-views/chemical_entity_assesses_named_thing_association_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: chemical_entity_assesses_named_thing_association
+# metamodel_version: 1.7.0# version: 3.5.4id: chemical_entity_assesses_named_thing_association
 schema_generating: true
 display_name: chemical entity assesses named thing association
 document_category: chemical entity assesses named thing association

diff --git a/golr-views/chemical_entity_config.yaml b/golr-views/chemical_entity_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: chemical_entity
+# metamodel_version: 1.7.0# version: 3.5.4id: chemical_entity
 schema_generating: true
 description: A chemical entity is a physical entity that pertains to chemistry or
   biochemistry.

diff --git a/golr-views/chemical_entity_or_gene_or_gene_product_regulates_gene_association_config.yaml b/golr-views/chemical_entity_or_gene_or_gene_product_regulates_gene_association_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: chemical_entity_or_gene_or_gene_product_regulates_gene_association
+# metamodel_version: 1.7.0# version: 3.5.4id: chemical_entity_or_gene_or_gene_product_regulates_gene_association
 schema_generating: true
 description: A regulatory relationship between two genes
 display_name: chemical entity or gene or gene product regulates gene association

diff --git a/golr-views/chemical_exposure_config.yaml b/golr-views/chemical_exposure_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: chemical_exposure
+# metamodel_version: 1.7.0# version: 3.5.4id: chemical_exposure
 schema_generating: true
 description: A chemical exposure is an intake of a particular chemical entity.
 display_name: chemical exposure

diff --git a/golr-views/chemical_gene_interaction_association_config.yaml b/golr-views/chemical_gene_interaction_association_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: chemical_gene_interaction_association
+# metamodel_version: 1.7.0# version: 3.5.4id: chemical_gene_interaction_association
 schema_generating: true
 description: describes a physical interaction between a chemical entity and a gene
   or gene product. Any biological or chemical effect resulting from such an interaction

diff --git a/golr-views/chemical_mixture_config.yaml b/golr-views/chemical_mixture_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: chemical_mixture
+# metamodel_version: 1.7.0# version: 3.5.4id: chemical_mixture
 schema_generating: true
 description: A chemical mixture is a chemical entity composed of two or more molecular
   entities.

diff --git a/...al_or_drug_or_treatment_side_effect_disease_or_phenotypic_feature_association_config.yaml b/...al_or_drug_or_treatment_side_effect_disease_or_phenotypic_feature_association_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: chemical_or_drug_or_treatment_side_effect_disease_or_phenotypic_feature_association
+# metamodel_version: 1.7.0# version: 3.5.4id: chemical_or_drug_or_treatment_side_effect_disease_or_phenotypic_feature_association
 schema_generating: true
 description: This association defines a relationship between a chemical or treatment
   (or procedure) and a disease or phenotypic feature where the disesae or phenotypic

diff --git a/...ws/chemical_or_drug_or_treatment_to_disease_or_phenotypic_feature_association_config.yaml b/...ws/chemical_or_drug_or_treatment_to_disease_or_phenotypic_feature_association_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: chemical_or_drug_or_treatment_to_disease_or_phenotypic_feature_association
+# metamodel_version: 1.7.0# version: 3.5.4id: chemical_or_drug_or_treatment_to_disease_or_phenotypic_feature_association
 schema_generating: true
 description: This association defines a relationship between a chemical or treatment
   (or procedure) and a disease or phenotypic feature where the disesae or phenotypic

diff --git a/golr-views/chemical_role_config.yaml b/golr-views/chemical_role_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: chemical_role
+# metamodel_version: 1.7.0# version: 3.5.4id: chemical_role
 schema_generating: true
 description: "\tA role played by the molecular entity or part thereof within a chemical\
   \ context."

diff --git a/golr-views/chemical_to_chemical_association_config.yaml b/golr-views/chemical_to_chemical_association_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: chemical_to_chemical_association
+# metamodel_version: 1.7.0# version: 3.5.4id: chemical_to_chemical_association
 schema_generating: true
 description: A relationship between two chemical entities. This can encompass actual
   interactions as well as temporal causal edges, e.g. one chemical converted to another.

diff --git a/golr-views/chemical_to_chemical_derivation_association_config.yaml b/golr-views/chemical_to_chemical_derivation_association_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: chemical_to_chemical_derivation_association
+# metamodel_version: 1.7.0# version: 3.5.4id: chemical_to_chemical_derivation_association
 schema_generating: true
 description: "A causal relationship between two chemical entities, where the subject\
   \ represents the upstream entity and the object represents the downstream. For any\

diff --git a/golr-views/chemical_to_disease_or_phenotypic_feature_association_config.yaml b/golr-views/chemical_to_disease_or_phenotypic_feature_association_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: chemical_to_disease_or_phenotypic_feature_association
+# metamodel_version: 1.7.0# version: 3.5.4id: chemical_to_disease_or_phenotypic_feature_association
 schema_generating: true
 description: An interaction between a chemical entity and a phenotype or disease,
   where the presence of the chemical gives rise to or exacerbates the phenotype.

diff --git a/golr-views/chemical_to_pathway_association_config.yaml b/golr-views/chemical_to_pathway_association_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: chemical_to_pathway_association
+# metamodel_version: 1.7.0# version: 3.5.4id: chemical_to_pathway_association
 schema_generating: true
 description: An interaction between a chemical entity and a biological process or
   pathway.

diff --git a/golr-views/chi_squared_analysis_result_config.yaml b/golr-views/chi_squared_analysis_result_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: chi_squared_analysis_result
+# metamodel_version: 1.7.0# version: 3.5.4id: chi_squared_analysis_result
 schema_generating: true
 description: A result of a chi squared analysis.
 display_name: chi squared analysis result

diff --git a/golr-views/clinical_attribute_config.yaml b/golr-views/clinical_attribute_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: clinical_attribute
+# metamodel_version: 1.7.0# version: 3.5.4id: clinical_attribute
 schema_generating: true
 description: Attributes relating to a clinical manifestation
 display_name: clinical attribute

diff --git a/golr-views/clinical_course_config.yaml b/golr-views/clinical_course_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: clinical_course
+# metamodel_version: 1.7.0# version: 3.5.4id: clinical_course
 schema_generating: true
 description: The course a disease typically takes from its onset, progression in time,
   and eventual resolution or death of the affected individual

diff --git a/golr-views/clinical_entity_config.yaml b/golr-views/clinical_entity_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: clinical_entity
+# metamodel_version: 1.7.0# version: 3.5.4id: clinical_entity
 schema_generating: true
 description: Any entity or process that exists in the clinical domain and outside
   the biological realm. Diseases are placed under biological entities

diff --git a/golr-views/clinical_finding_config.yaml b/golr-views/clinical_finding_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: clinical_finding
+# metamodel_version: 1.7.0# version: 3.5.4id: clinical_finding
 schema_generating: true
 description: this category is currently considered broad enough to tag clinical lab
   measurements and other biological attributes taken as 'clinical traits' with some

diff --git a/golr-views/clinical_intervention_config.yaml b/golr-views/clinical_intervention_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: clinical_intervention
+# metamodel_version: 1.7.0# version: 3.5.4id: clinical_intervention
 schema_generating: true
 display_name: clinical intervention
 document_category: clinical intervention

diff --git a/golr-views/clinical_measurement_config.yaml b/golr-views/clinical_measurement_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: clinical_measurement
+# metamodel_version: 1.7.0# version: 3.5.4id: clinical_measurement
 schema_generating: true
 description: A clinical measurement is a special kind of attribute which results from
   a laboratory observation from a subject individual or sample. Measurements can be

diff --git a/golr-views/clinical_modifier_config.yaml b/golr-views/clinical_modifier_config.yaml
@@ -1,4 +1,4 @@
-# metamodel_version: 1.7.0# version: 3.5.3id: clinical_modifier
+# metamodel_version: 1.7.0# version: 3.5.4id: clinical_modifier
 schema_generating: true
 description: Used to characterize and specify the phenotypic abnormalities defined
   in the phenotypic abnormality sub-ontology, with respect to severity, laterality,