Merge pull request #1489 from biolink/4.2.0

4.2.0
biolink · Apr 12, 2024 · d58961d · d58961d
2 parents 6f70752 + c77a85f
commit d58961d
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Showing 13 changed files with 23,911 additions and 21,810 deletions.
diff --git a/poetry.lock b/poetry.lock
diff --git a/project/jsonld/biolink_model.context.jsonld b/project/jsonld/biolink_model.context.jsonld
diff --git a/project/jsonld/biolink_model.jsonld b/project/jsonld/biolink_model.jsonld
@@ -34828,9 +34828,9 @@
   ],
   "metamodel_version": "1.7.0",
   "source_file": "biolink_model.yaml",
-  "source_file_date": "2024-04-12T22:15:18",
+  "source_file_date": "2024-04-12T15:17:51",
   "source_file_size": 392125,
-  "generation_date": "2024-04-12T22:15:25",
+  "generation_date": "2024-04-12T15:17:57",
   "@type": "SchemaDefinition",
   "@context": [
     "project/jsonld/biolink_model.context.jsonld",

diff --git a/project/jsonschema/biolink_model.schema.json b/project/jsonschema/biolink_model.schema.json
@@ -33238,7 +33238,7 @@
         }
     },
     "$id": "https://w3id.org/biolink/biolink-model",
-    "$schema": "http://json-schema.org/draft-07/schema#",
+    "$schema": "https://json-schema.org/draft/2019-09/schema",
     "additionalProperties": true,
     "metamodel_version": "1.7.0",
     "title": "Biolink-Model",

diff --git a/project/owl/biolink_model.owl.ttl b/project/owl/biolink_model.owl.ttl
diff --git a/project/shacl/biolink_model.shacl.ttl b/project/shacl/biolink_model.shacl.ttl
diff --git a/project/shex/biolink_model.shex b/project/shex/biolink_model.shex
diff --git a/pyproject.toml b/pyproject.toml
@@ -14,10 +14,10 @@ generate_viz_json = "src.biolink_model.scripts.generate_json:generate_viz_json"
 [tool.poetry.dependencies]
 python = "^3.9"
 curies = "^0.7.4"
-prefixmaps = "^0.2.0"
+prefixmaps = "^0.2.3"
 pyyaml = "^6.0.1"
 stringcase = "^1.2.0"
-pytest = "^7.3.1"
+pytest = "^8.1.1"
 beautifulsoup4 = ">=4.0.0"
 yamllint = "^1.35.1"
 
@@ -29,9 +29,9 @@ style = "pep440"
 [tool.poetry.dev-dependencies]
 linkml = ">=1.6.3"
 mkdocs = "^1.4.2"
-mkdocs-material = "^9.4.8"
+mkdocs-material = "^9.5.17"
 mkdocs-mermaid2-plugin = "^1.1.1"
-schemasheets = "^0.1.14"
+schemasheets = "^0.2.1"
 codespell = "^2.2.6"
 
 [build-system]

diff --git a/src/biolink_model/datamodel/model.py b/src/biolink_model/datamodel/model.py
@@ -1,5 +1,5 @@
 # Auto generated from biolink_model.yaml by pythongen.py version: 0.0.1
-# Generation date: 2024-04-12T22:15:48
+# Generation date: 2024-04-12T15:18:12
 # Schema: Biolink-Model
 #
 # id: https://w3id.org/biolink/biolink-model
@@ -11,6 +11,7 @@
 from jsonasobj2 import JsonObj, as_dict
 from typing import Optional, List, Union, Dict, ClassVar, Any
 from dataclasses import dataclass
+from datetime import date, datetime
 from linkml_runtime.linkml_model.meta import EnumDefinition, PermissibleValue, PvFormulaOptions
 
 from linkml_runtime.utils.slot import Slot