Releases: biolink/biolink-model
Releases · biolink/biolink-model
v3.3.2
What's Changed
- updates for automat infores entries by @EvanDietzMorris in #1303
- Update infores format, fix broken rows, add inforeses for monarchinitiative by @sierra-moxon in #1304
Full Changelog: v3.3.1...v3.3.2
v3.3.1
What's Changed
- refactor catalyzes domain/range, fixes #1262 by @sierra-moxon in #1298
- update doc links, copy biolink-model.yaml into the docs dir, copy predicate map into docs dir. by @sierra-moxon in #1300
Full Changelog: v3.3.0...v3.3.1
v3.3.0
What's Changed
- codespell: configuration, github action + typos fixed by @yarikoptic in #1285
- Update codespell to ignore regenerated files by @sierra-moxon in #1286
- Poetry for artifacts by @sierra-moxon in #1287
- Add infores by @gloriachin in #1288
- Improved CAM-KP infores entries by @gaurav in #1293
- Update COHD URLs to Translator Wiki landing pages in Infores Catalog by @CaseyTa in #1290
- fix prefix for biolink by @sierra-moxon in #1297
- Semmeddb mappings per analysis in #1292, fixes #1295 by @sierra-moxon in #1294
- fixes #1279 fixes #1216 by @sierra-moxon in #1296
New Contributors
- @yarikoptic made their first contribution in #1285
- @gloriachin made their first contribution in #1288
- @gaurav made their first contribution in #1293
Full Changelog: v3.2.8...v3.3.0
v3.2.8
What's Changed
- Update infores_catalog_nodes.tsv by @karafecho in #1273
- Fix mappings and domains/ranges for inputs/outputs by @balhoff in #1276
- Fix incorrect domains and ranges of 'actively involved in'/'actively involves' by @balhoff in #1275
- Fix typo in 'colocalizes with' RO ID by @balhoff in #1274
- Move mapping to RO 'results in movement of' by @balhoff in #1277
- Added 4 missing URLs for Multiomics Provider KPs by @gglusman in #1281
- add a better description for xref by @sierra-moxon in #1282
- Setting URLs for Text Mining KPs by @edgargaticaCU in #1284
- adding content for supporting publications modeling by @mbrush in #1256
- prepping for 3.2.8 release by @sierra-moxon in #1283
New Contributors
- @gglusman made their first contribution in #1281
- @edgargaticaCU made their first contribution in #1284
Full Changelog: v3.2.7...v3.2.8
v3.2.7
What's Changed
- Fix Wormbase ontology prefixes by @balhoff in #1261
- Update infores_catalog_nodes.tsv by @GitHubbit in #1263
- add space to yaml for better readability by @sierra-moxon in #1264
- minimum diff for infores url update by @sierra-moxon in #1266
- Add in_taxon_label as a node property by @kevinschaper in #1270
- fix according to Jim B's analysis, fixes #1257 by @sierra-moxon in #1267
- Remove singular, fixes #1268 by @sierra-moxon in #1269
- fixes #1165 - refactors KEGG hardcoded prefixes and oboInOwl/oboformat/OIO prefix usage by @sierra-moxon in #1271
New Contributors
- @GitHubbit made their first contribution in #1263
Full Changelog: v3.2.6...v3.2.7
v3.2.6
What's Changed
- Update infores_catalog_nodes.tsv by @karafecho in #1258
- Denormalized edge properties KGX SQL serialization by @sierra-moxon in #1259
- add denormalized annotations for use in KGX by @sierra-moxon in #1260
New Contributors
- @karafecho made their first contribution in #1258
Full Changelog: v3.2.5...v3.2.6
v3.2.5
What's Changed
- add support graphs as a property of edges or nodes by @sierra-moxon in #1253
Full Changelog: v3.2.4...v3.2.5
v3.2.4
What's Changed
- add slot usage required instead of broad slot required by @sierra-moxon in #1252
Full Changelog: v3.2.3...v3.2.4
v3.2.3
What's Changed
- removing infores entries for automats that are no longer active by @EvanDietzMorris in #1251
Full Changelog: v3.2.2...v3.2.3
v3.2.2
What's Changed
- #1220 Add UniProt purl's for UniProt entries + Isoforms by @JervenBolleman in #1224
- add entity as a domain for id by @sierra-moxon in #1225
- added mpath mappings by @vincentvialard in #1233
- Add infores:phenio to infores catalog by @kevinschaper in #1235
- adding eRAM and TIGA infores entries by @EvanDietzMorris in #1231
- Bump markdown-it-py from 2.1.0 to 2.2.0 by @dependabot in #1229
- adding classes from Ben H, fixes #1210 by @sierra-moxon in #1222
- Added "gene fusion with" and "genetic neighborhood of" to describe genetic interactions. by @beasleyjonm in #1123
- Add pharmgkb prefixes for chemical, disease, gene, variant by @andrewsu in #1241
- add infores:aeolus by @andrewsu in #1243
- Better omnicorp URL by @cbizon in #1244
- add infores for Richards Effector Gene List by @sierra-moxon in #1246
- Add infores identifier for Columbia Clinical Data Warehouse by @CaseyTa in #1247
- maintenance and support for TRAPI 1.4 fixes #1230, fixes #1232, fixes #1238, fixes #1240, fixes #1249 by @sierra-moxon in #1248
- update smart api urls fixes #1245 by @sierra-moxon in #1250
New Contributors
Full Changelog: v3.2.1...v3.2.2