v4.2.5

What's Changed

• Update biolink-model.yaml for CTKP requirements by @mbrush in #1526
• Remove if absent annotations causing downstream issues in python dataclasses by @sierra-moxon in #1528
• Add disease context qualifier (to the right place this time) by @kevinschaper in #1529
• ready the repo for release by @sierra-moxon in #1530
• Predicate inverses & tests by @sierra-moxon in #1532
• Move disease_context_qualifier up to a higher level mixin by @kevinschaper in #1533
• add subject/object specialization qualifier to help represent extensions in MAXO and GO-CAM by @sierra-moxon in #1534
• Add species context qualifier to macromolecular machine association mixin by @kevinschaper in #1535

Full Changelog: v4.2.4...v4.2.5

v4.2.5-rc2

What's Changed

• Add disease context qualifier (to the right place this time) by @kevinschaper in #1529
• ready the repo for release by @sierra-moxon in #1530

Full Changelog: v4.2.5-rc1...v4.2.5-rc2

What's Changed

• Add disease context qualifier (to the right place this time) by @kevinschaper in #1529
• ready the repo for release by @sierra-moxon in #1530

Full Changelog: v4.2.5-rc1...v4.2.5-rc2

v4.2.5-rc1

What's Changed

• Update biolink-model.yaml for CTKP requirements by @mbrush in #1526
• Remove if absent annotations causing downstream issues in python dataclasses by @sierra-moxon in #1528

Full Changelog: v4.2.4...v4.2.5-rc1

v4.2.4

What's Changed

• fix gen-pydantic command by @sierra-moxon in #1527

Full Changelog: v4.2.3...v4.2.4

v4.2.3

What's Changed

• Update biolink-model.yaml - minor update to 'treats' def by @mbrush in #1522
• Add disease context qualifier and make it available only to phenotype associations (initially, at least) by @kevinschaper in #1524
• update predicate mapping to refer to qualified predicates for regulates by @sierra-moxon in #1491
• fix for Issue #1480 by @sierra-moxon in #1505

Full Changelog: v4.2.2...v4.2.3

v4.2.2

What's Changed

• Bump requests from 2.31.0 to 2.32.0 by @dependabot in #1508
• fix: flip domain/range for top-level "treats" predicates by @colleenXu in #1512
• Add a description to AgentTypeEnum by @nicholsn in #1510
• Bump urllib3 from 2.1.0 to 2.2.2 by @dependabot in #1513
• Bump certifi from 2023.11.17 to 2024.7.4 by @dependabot in #1518
• Bump zipp from 3.17.0 to 3.19.1 by @dependabot in #1519
• Bump setuptools from 69.0.2 to 70.0.0 by @dependabot in #1520
• restore enumeration to use just for denormalized node properties for … by @sierra-moxon in #1506
• make necessary changes to id_prefixes for chemical entity hierarchy by @sierra-moxon in #1500
• TRAPI multi-CURIE query use cases semantics by @RichardBruskiewich in #1509
• 4.2.2 release by @sierra-moxon in #1521

Full Changelog: v4.2.1...v4.2.2

v4.2.1

What's Changed

• revert semmed mappings for associated_with and administrated_to in root level yaml file by @sierra-moxon in #1490
• Additional RO term to has_phenotype by @kevinschaper in #1495
• Bump jinja2 from 3.1.3 to 3.1.4 by @dependabot in #1502
• Bump tqdm from 4.66.1 to 4.66.3 by @dependabot in #1501
• add 'url' property with a description that was difficult to write in … by @sierra-moxon in #1492
• Fix biolink:treats (and related) mixin predicate(s) to connect with related_to hierarchy by @RichardBruskiewich in #1504
• Add p_value & adjusted_p_value slots to Association class by @kevinschaper in #1497

Full Changelog: v4.2.0...v4.2.1

v4.2.0

What's Changed

• Update biolink-model.yaml by @mbrush in #1481
• Add klat by @kevinschaper in #1487
• infores catalog has now moved to its own repository.
• onset is reintroduced to ONLY support HP disease-> phenotype annotations, not "treats" associations.
• Knowledge level agent type new dir by @sierra-moxon in #1470
• check links in doc by @sierra-moxon in #1465
• Fix category type for pydantic generated models, remove pydantic 1 generation by @sierra-moxon in #1468
• Update links and autogenerated artifacts in README.md by @deepakunni3 in #1476
• fix mislabeled ranges to domain by @sierra-moxon in #1475
• relaxed mappings for a couple of chemicals, made them mappings of Che… by @sierra-moxon in #1474
• remove skos:relatedMatch as an exact mapping to biolink relate… by @sierra-moxon in #1473
• fix order of prefixes for small molecule and chemical entity by @sierra-moxon in #1471
• Adds knowledge_level and agent_type as association slots, makes them required and sets a default value. by @kevinschaper
• Bump idna from 3.6 to 3.7 by @dependabot in #1488
• 4.2.0 by @sierra-moxon in #1489

Full Changelog: v4.2.0-rc.2...v4.2.0

v4.2.0-rc.2

What's Changed

• remove information resource catalog from biolink repository by @sierra-moxon in #1469
• support onset in HPO annotations for monarch, but restrict use of ons… by @sierra-moxon in #1478
• Support hpoa annotation format by @sierra-moxon in #1479

Full Changelog: v4.2.0-rc.1...v4.2.0-rc.2

v4.2.0-rc.1

What's Changed

• Knowledge level agent type new dir by @sierra-moxon in #1470
• check links in doc by @sierra-moxon in #1465
• Fix catagory type for pydantic generated models, remove pydantic 1 generation by @sierra-moxon in #1468
• Update links and autogenerated artifacts in README.md by @deepakunni3 in #1476
• fix mislabeled ranges to domain by @sierra-moxon in #1475
• relaxed mappings for a couple of chemicals, made them mappings of Che… by @sierra-moxon in #1474
• remove - skos:relatedMatch as an exact mapping to biolink relate… by @sierra-moxon in #1473
• move semmed administered_to and associated_with to their new respecti… by @sierra-moxon in #1472
• fix order of prefixes for small molecule and chemical entity by @sierra-moxon in #1471

Full Changelog: v4.1.6...v4.2.0-rc.1